Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6666 105 8e-18 seq347 98.7 1e-15 seq2817 87.8 2e-12 seq92 87.8 2e-12 >seq6666 Length=2405 Score = 105 bits (116), Expect = 8e-18 Identities = 376/576 (65%), Gaps = 14/576 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||| ||||| || | || || | ||||| Sbjct 1427 TACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATC 1486 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 1487 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 1545 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||| ||||||| | |||| | | |||||||| ||||| || | || Sbjct 1546 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCAC 1605 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 1606 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 1664 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| |||| | || Sbjct 1665 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 1720 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| || || |||||| Sbjct 1721 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 1780 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | ||| | || | |||||| || || ||||||||||| |||||| Sbjct 1781 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 1840 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAACCATTT 122843 ||| || ||||| | || || || | | | || ||| ||| | || |||| || Sbjct 1841 ACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTT 1899 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 122903 | ||||| | ||| ||||||| | ||| || | || | |||||| | | || Sbjct 1900 GAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTG 1959 Query 122904 CTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | ||| || | ||||||| ||||| ||||||| Sbjct 1960 GTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 1995 >seq347 Length=38231 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| |||||||| ||| | || || || || |||||||| | | | || || || Sbjct 27263 AACCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACC 27322 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || ||||| || | || || ||||||||||| | ||| | | || ||| Sbjct 27323 ATTCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAG 27382 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 27383 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTCGTGAAAATATAACGAGCGCTGGC 27440 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | ||||||||| || ||||| |||| || |||| || Sbjct 27441 TGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGAT 27500 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || || Sbjct 27501 GTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 27557 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||| ||||| || || | || | ||||| | ||||| ||||||||||||| Sbjct 27558 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 27616 >seq2817 Length=7496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 3009 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 3068 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 3069 CCGGTAGGAGCTT 3081 >seq92 Length=63871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| | ||||| || ||| || || || || ||||||| || || Sbjct 49551 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 49492 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||| |||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 49491 GGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 49432 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 |||||||| || |||| | | ||| || | | | || ||| ||| | || | Sbjct 49431 CCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 49373 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 49372 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 49313 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | || | ||| || | ||||||| ||||| ||||||| Sbjct 49312 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 49271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627964926182400