Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6666 181 1e-40 seq92 129 7e-25 >seq6666 Length=2405 Score = 181 bits (200), Expect = 1e-40 Identities = 394/581 (68%), Gaps = 18/581 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 1427 TACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATC 1486 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || ||||||||| ||| | || | ||| || | | | || ||||| Sbjct 1487 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 1546 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | |||||||| ||||| || | ||| Sbjct 1547 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACA 1606 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||| || || |||||||| |||| Sbjct 1607 -GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1665 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 1666 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 1718 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 1719 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 1778 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 1779 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 1838 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAACCAC 130198 ||||| |||||||| | |||||||| | | || || ||| | || ||||| Sbjct 1839 CCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCAC 1897 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || | |||||| ||||| || |||| | |||||||| || | ||| || | || Sbjct 1898 TTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGG 1957 Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | | ||| || | | ||| ||||||||| | || ||||| Sbjct 1958 TGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 1998 >seq92 Length=63871 Score = 129 bits (142), Expect = 7e-25 Identities = 201/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 || || ||| ||| | |||||||||||| ||| || || |||||||||| ||| || Sbjct 49551 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 49492 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||| |||| || |||||||| | |||||| |||| || || ||||| ||||||||||| Sbjct 49491 GGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 49432 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAA 130194 |||||||| ||||||| | | ||||| | | || || ||| | || | Sbjct 49431 CCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 49373 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| | |||||| ||||| || |||| | |||||||| || | ||| || | Sbjct 49372 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 49313 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | | ||| || | | ||| ||||||||| | || ||||| Sbjct 49312 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 49268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618369151120640