Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1232 172 6e-38 seq6666 134 2e-26 seq92 116 4e-21 >seq1232 Length=16645 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| | | | Sbjct 2080 CCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCCACAAGAGCAACATTGCGGCCGCC 2021 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 2020 CTGGAGACGTACGAGCTTATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 1965 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| ||||||||| | |||| | || Sbjct 1964 TTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGA 1905 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | | ||||| ||||| || ||||| Sbjct 1904 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGC 1845 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 1844 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTAC-ATCCGAGGCA 1786 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 1785 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 1726 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| ||||| | ||||| |||| Sbjct 1725 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGCCTTGGC 1666 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| || ||||| | | | | Sbjct 1665 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAACGAGTTG-CACCGC 1607 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 1606 GCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 1547 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||||| ||| || || |||| ||||| |||| || ||| | ||| Sbjct 1546 AATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 1488 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 1487 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 1454 >seq6666 Length=2405 Score = 134 bits (148), Expect = 2e-26 Identities = 193/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 1998 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 1939 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 1938 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 1879 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 1878 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 1823 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 1822 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1763 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 1762 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1733 >seq92 Length=63871 Score = 116 bits (128), Expect = 4e-21 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 49268 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 49327 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 49328 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 49387 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| | | | || || || ||||| ||||||||||| Sbjct 49388 TCGTCGTACC----CGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTC 49443 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||| ||| || || |||| Sbjct 49444 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTT 49503 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 49504 CTCGAACGAGCTGATCAGCCGTGACGAGGG 49533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583198507746560