Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1163 147 7e-30 seq53 141 3e-28 seq1991 96.9 1e-14 seq570 95.1 4e-14 seq2518 91.5 4e-13 seq8528 89.7 2e-12 seq3352 84.2 7e-11 seq209 84.2 7e-11 >seq1163 Length=17587 Score = 147 bits (162), Expect = 7e-30 Identities = 927/1472 (63%), Gaps = 18/1472 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || |||| ||| ||||| || || || || || Sbjct 6084 GGCATTGATCTGGGCACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGACCGCGTGGAG 6025 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | || || || || ||||| || || || || || Sbjct 6024 ATCATCGCCAATGACCAGGGCAACCGCACCACCCCGTCGTACGTGGCGTTCACGGATACC 5965 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| |||||| | || || || |||| ||| || | | || ||||| Sbjct 5964 GAGCGTCTGATCGGTGATGCGGCCAAGAACCAAGTGGCTATGAACGCCCACAACACGGTG 5905 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||||| ||||| || || || | | || | ||| | || || || | Sbjct 5904 TTTGATGTCAAGCGCCTCATCGGCCGCAAGTTCACGGACCCAGAAGTGCAGTCGGACATC 5845 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT-GAGGTTGA 349503 || || | || || | || || ||| || || | | | | ||| | Sbjct 5844 AAGCACTGGCCGTTCAAGGTGACTCGTGGCC-CGGAGAACAAGCCTCAAGTCGTGGTGCA 5786 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || ||||| || || || ||||| | | | Sbjct 5785 GTTCAAGGGCGAGTCCAAGACG-TTCCAGCCTGAAGAGATCTCGTCCATGGTGCTGATCA 5727 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || || || || || || | || | ||| | |||| || | || | Sbjct 5726 AGATGCGCGAGATCGCCGAGGCGTACATCGGCAAGCAAGTGAAGAATGCCGTGGTGACGG 5667 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || || ||||| || || | ||||| || || || ||||| ||| || || | Sbjct 5666 TGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCTACGAAGGATGCCGGCGCTATCGCTG 5607 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 || | || || || | || || || || || || ||||| || ||||| || || || | Sbjct 5606 GGCTGAACGTCCTGCGTATCATCAACGAGCCGACGGCTGCTGCTATTGCCTACGGCCTGG 5547 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | ||| | | | | || | || || |||||| | || || || || |||| Sbjct 5546 ACAAGAAGGGTGGCGA-GCACAACGTGTTG--ATCTTTGATCTGGGAGGCGGAACGTTTG 5490 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 | || || || || || | ||||| || || || || || || || || || || || | Sbjct 5489 ACGTCTCGCTCCTTACGATCGAAGAAGGCATCTTCGAGGTGAAGGCGACGGCGGGCGACA 5430 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| || || ||||| || ||| | || | | || || | || || | Sbjct 5429 CGCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTCGAGTACTTCGTGACCGAGTTCA 5370 Query 349923 AGCGTCAAGCTAAA--ATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| |||| || | ||| | | | || | | || |||||||| || | || Sbjct 5369 AGCG-CAAG-TACCGCAAGGATCTGGCCGTGAACTCGCGTGCGATGCGTCGTCTCCGTAC 5312 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 ||||| || || || ||||| | | || || | | ||| | | |||| || || Sbjct 5311 GGCGTGCGAGCGCGCGAAGCGAACGCTGTCCACTTCGGCGCAAGCGTACCTTGAGATCGA 5252 Query 350041 TTCTCTTGCTG-ATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAAT 350099 ||| ||| || | || | || ||| || | ||||| ||||||||||| || || Sbjct 5251 TTCG-TTGTTGGACGGTATCGACTTCAACTCGACCATTACGCGTGCTCGGTTCGAGGATC 5193 Query 350100 TATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 | || | || | || | || ||||| ||||||| | || || || | | Sbjct 5192 TGTGCAACGAGTTCTTCCGCAAGACGATGGACCCTGTGGCGCAGGTGTTGCGGGACTCGA 5133 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | |||| || | || | | || || ||| | || || || || || ||||| || | Sbjct 5132 AGCTGTCGAAGAGCCAAGTGAACGAGGTGGTTCTGGTCGGAGGGTCGACTCGTATCCCGA 5073 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAAT 350278 |||| || ||||| | || ||||| |||||||| || | ||| || || || || Sbjct 5072 AAGTGCAGCAGTTGTTGATGGACTTTTTCAATGGCAAGGAGCTGTTCAAG-TCGATCAAC 5014 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAG 350338 || || ||||| || || ||||| || | || || || |||| || ||| ||| | Sbjct 5013 CCGGACGAAGCAGTCGCCTATGGAGCCACCGTGCAAGCCGCTATCCTAAGTGGCAATGAC 4954 Query 350339 AGTTC--TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 || || ||| | |||||| |||| || || || | || || ||||||| || Sbjct 4953 TCGTCCGCCAAGTTGCAGGATCTACTACTGCTGGACGTGGCCCCGCTGCCGCTTGGGTTG 4894 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || |||||| ||| ||||| || || || | || | || | ||| | || Sbjct 4893 GAGACCGCTGGTGGAGTCATGACGAAACTCATCCCGCGTAACACGACGATTCCTTCCAAG 4834 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || | || || || | |||||| || ||| | | ||| ||||| || || Sbjct 4833 AAGACGCAGTCGTTCTCGACGTATGCAGACAACCAGTCCGGGGTGTTGATTCAGGTGTTC 4774 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || || || || | || || ||| || ||| ||| | || | || | Sbjct 4773 GAGGGCGAGCGCACAATGACCCGTGACAATCATCTACTGGGAAAGTTCAATCTGGACGGC 4714 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || |||||| | || || || ||||| || || | |||||| ||||| || Sbjct 4713 ATCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGACGTAACGTTCGATGTTGATGTCAAC 4654 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 || ||||| || || | || || || || || Sbjct 4653 GGCATTTTGAACGTGTCAGCCGTGGAGAAGTC 4622 >seq53 Length=72612 Score = 141 bits (156), Expect = 3e-28 Identities = 466/719 (65%), Gaps = 9/719 (1%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || || ||||| || || | ||||| || || || || || Sbjct 1224 GCCGTGATCACGGTGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCGACGAAGGACGCC 1165 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || ||| Sbjct 1164 GGTGCCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATT 1105 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | | | | || || | || || || || | ||| Sbjct 1104 GCCTACGGTCTGGACAAGAAGGGCGGT---GAGCGTAACGTGCTGATCTTCGACCTGGGT 1048 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || ||||| || || || | |||| ||||| || || || || || || Sbjct 1047 GGCGGTACCTTCGATGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAGGCC 988 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || || ||||| || || || || || |||||||| || || Sbjct 987 ACTGCTGGTGACACGCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTCGACCACTTC 928 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 | || || |||||| |||| | || || || || | | || | || Sbjct 927 ACGCAGGAGTTCAAGCGT-AAGCACCGCAAGGACATCACGGAGAACCAGCGCGCTCTCCG 869 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || | ||||| || || |||||||||||| | | || || | |||| | | Sbjct 868 TCGTCTGCGGACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGCTTA 809 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| ||||| ||||| ||||||| || ||| || | || || |||||||| Sbjct 808 CATTGAGATTGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGCTCG 749 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTA 350146 || || || |||| || | | ||| || ||||| || ||||| || || Sbjct 748 TTTCGAGGA--CATGTGCGGTGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAGGTC 691 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || ||||||| | ||| | | || || || | || ||||| || Sbjct 690 CTCCGTGATGCCAAGCTGTCCAAGAGCCAGGTGCACGAGGTCGTCCTGGTCGGTGGCTCC 631 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || || || ||| | || || || || || || ||||| || || Sbjct 630 ACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCCAAC 571 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 | || || || || ||||| |||||||| || ||||| | || ||||| | ||||| Sbjct 570 AAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCACCGTCCAGGCTGCCATTTT 512 >seq1991 Length=11907 Score = 96.9 bits (106), Expect = 1e-14 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 235873 GATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAG 235932 ||||| ||| | ||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 736 GATGT-GTTGAGTATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAG 794 Query 235933 AGGTACCGGGATCAAAACCCAGCATCTCCA 235962 |||||| |||||| | |||| || |||||| Sbjct 795 AGGTACAGGGATCGATACCCTGCTTCTCCA 824 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 3572 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 3631 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 3632 CCCTGCTTCTCCA 3644 Score = 89.7 bits (98), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 235874 ATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGA 235933 |||| ||| | ||| |||||||||| |||| ||||||| ||||||||| |||||||||| Sbjct 1 ATGT-GTTGAGTATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGA 59 Query 235934 GGTACCGGGATCAAAACCCAGCATCTCCA 235962 |||| |||||| | |||| || |||||| Sbjct 60 GGTATAGGGATCGATACCCTGCTTCTCCA 88 >seq570 Length=29657 Score = 95.1 bits (104), Expect = 4e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 28827 CATTCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 28768 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| || || Sbjct 28767 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 28708 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || || ||||| || || || || Sbjct 28707 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 28648 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || ||||| | ||||| || || || || || || |||||||||||| Sbjct 28647 CACGTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 >seq2518 Length=8553 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1358 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1299 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1298 CCCTGCTTCTCCA 1286 >seq8528 Length=1280 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 120 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 179 Query 74548 TCGGGCA 74554 ||||||| Sbjct 180 TCGGGCA 186 >seq3352 Length=5430 Score = 84.2 bits (92), Expect = 7e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 4730 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 4671 Query 74548 TCGG 74551 |||| Sbjct 4670 TCGG 4667 >seq209 Length=45680 Score = 84.2 bits (92), Expect = 7e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 235892 GGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACC 235951 |||||||| |||| ||||||| ||||||||| ||||||||||||||| ||| || | ||| Sbjct 20855 GGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGGTCGATACC 20914 Query 235952 CAGCATCTCCA 235962 | || |||||| Sbjct 20915 CTGCTTCTCCA 20925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515088525100832