Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq164 192 5e-44 seq760 105 5e-18 >seq164 Length=50448 Score = 192 bits (212), Expect = 5e-44 Identities = 408/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | | || || ||||| || || || | |||| Sbjct 4606 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 4665 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 4666 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 4725 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 4726 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 4785 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||| ||||| || | ||| ||||| || || ||||| Sbjct 4786 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT- 4844 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 4845 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 4901 Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 4902 TGTGCGCAGCTT--GTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 4959 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 4960 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 5019 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 5020 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 5079 Query 30338 GCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 5080 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 5139 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 5140 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 5199 Query 30458 AAC 30460 ||| Sbjct 5200 AAC 5202 >seq760 Length=24494 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 7032 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 7091 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 7092 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 7151 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 7152 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 7211 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 7212 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 7271 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| |||| | || ||| |||| |||||| ||| Sbjct 7272 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 7331 Query 49334 CGCGGC 49339 |||||| Sbjct 7332 CGCGGC 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406268090898048