Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq132 150 2e-31 seq570 143 2e-29 >seq132 Length=78195 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || ||||| ||||| Sbjct 54558 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 54617 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || || || ||||| || ||||| || || || || Sbjct 54618 GGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 54677 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| || || | ||| ||||| Sbjct 54678 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 54737 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 54738 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 54788 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || ||||| ||||| Sbjct 54786 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 54845 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || || || ||||| || ||||| || || || || Sbjct 54846 GGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 54905 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| || || | ||| ||||| Sbjct 54906 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 54965 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 54966 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 55016 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 54331 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54390 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || || || || ||||| || ||||| || || || || Sbjct 54391 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54450 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| || || | ||| |||||| Sbjct 54451 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54510 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 54511 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 54560 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || ||||| ||||| Sbjct 55014 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 55073 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || || || ||||| || ||||| || || || || Sbjct 55074 GGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 55133 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| || || | ||| ||||| Sbjct 55134 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55193 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| | || |||| |||| | || ||||| Sbjct 55194 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTTCGTGGTGG 55241 >seq570 Length=29657 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 29281 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 29340 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 29341 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29400 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| || || | ||| |||||| Sbjct 29401 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29460 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 29461 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 29507 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 28597 ATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACACTCGACGTGGAGCCGTCG 28656 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 28657 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 28716 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| || || | ||| |||||| Sbjct 28717 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 28776 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| || || || Sbjct 28777 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGAAT 28826 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 28825 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 28884 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 28885 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 28944 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| || || | ||| |||||| Sbjct 28945 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29004 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| || || || Sbjct 29005 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGAAT 29054 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 29053 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 29112 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 29113 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29172 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| || || | ||| |||||| Sbjct 29173 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29232 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| || || || Sbjct 29233 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGAAT 29282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434871950714880