Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq2512 158 6e-34 >seq2512 Length=8873 Score = 158 bits (174), Expect = 6e-34 Identities = 335/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Plus Query 64213 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 64272 ||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| || Sbjct 4385 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 4444 Query 64273 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 64332 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 4445 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 4504 Query 64333 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 64392 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 4505 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 4564 Query 64393 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 64452 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 4565 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 4624 Query 64453 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 64509 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 4625 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 4683 Query 64510 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 64569 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 4684 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGAATCAT---CTTCGGATCTCCTGAGGT 4738 Query 64570 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 64629 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 4739 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 4798 Query 64630 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 64689 | || ||||| ||||| ||| |||||||||| || ||||||||| | ||| Sbjct 4799 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 4858 Query 64690 GAACAAGCTGGCCCCGCC 64707 |||||| || ||| |||| Sbjct 4859 GAACAAACTTGCCTCGCC 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232778958202784