Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq2512 156 2e-33 >seq2512 Length=8873 Score = 156 bits (172), Expect = 2e-33 Identities = 334/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302 |||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| ||| Sbjct 4386 GCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGAC 4445 Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66362 | ||| || || ||||||||| | ||||| | || |||||||||| ||| Sbjct 4446 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGAC 4505 Query 66363 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66422 ||| ||| ||| || | | || | |||| || | ||| |||||| || |||||| Sbjct 4506 ACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTG 4565 Query 66423 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66482 ||||| || ||||| || || || || || ||| || | | ||||| ||||| ||| Sbjct 4566 CCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTC 4625 Query 66483 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66539 ||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 4626 ATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 4683 Query 66540 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66599 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 4684 -TCTTCCTGAACCAGATTCGCCAGAAGGTGGGAATCAT---CTTCGGATCTCCTGAGGTT 4739 Query 66600 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66659 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 4740 ACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAG 4799 Query 66660 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66719 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 4800 ACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAG 4859 Query 66720 AACAAGCTGGCCCCGCC 66736 ||||| || ||| |||| Sbjct 4860 AACAAACTTGCCTCGCC 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240934908835200