Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq570 154 3e-32 seq132 152 1e-31 seq884 132 1e-25 seq1033 96.9 8e-15 >seq570 Length=29657 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 28808 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 28749 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 28748 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28689 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || ||||| ||||| ||| Sbjct 28688 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGTGTGATGGTC 28629 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || || | ||||||| Sbjct 28628 TTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 29036 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 28977 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 28976 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28917 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || ||||| ||||| ||| Sbjct 28916 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTC 28857 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || || | ||||||| Sbjct 28856 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 29264 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 29205 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 29204 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29145 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || ||||| ||||| ||| Sbjct 29144 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTC 29085 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || || | ||||||| Sbjct 29084 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 29492 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 29433 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 29432 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29373 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || ||||| ||||| ||| Sbjct 29372 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTC 29313 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || || | ||||||| Sbjct 29312 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 >seq132 Length=78195 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || ||||| || || ||||| || || || || Sbjct 55236 ACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 55177 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || |||||||| || | || Sbjct 55176 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 55117 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || ||||| ||||| | ||| || || || || || Sbjct 55116 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 55057 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| || ||||| ||||| | |||||| Sbjct 55056 CGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || || || || | || || Sbjct 54770 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 54711 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||||||| Sbjct 54710 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 54651 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 54650 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 54591 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 54590 TTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || || || || | || || Sbjct 54998 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 54939 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||||||| Sbjct 54938 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 54879 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 54878 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 54819 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 54818 TTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || || || || | || || Sbjct 54542 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 54483 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||||||| Sbjct 54482 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 54423 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 54422 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 54363 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 54362 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 >seq884 Length=21595 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 4796 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4855 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || |||||||| || | || |||||||||||||| || || || || || || Sbjct 4856 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4915 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 4916 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4975 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 4976 ATCTGCAT 4983 >seq1033 Length=19618 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || |||| |||||| | || || Sbjct 11454 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 11513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | |||| Sbjct 11514 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATTCCT 11564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159025107630560