Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq570 105 5e-18 >seq570 Length=29657 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || ||||| || || ||||| ||||| || || | | Sbjct 28596 AATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACACTCGACGTGGAGCCGTC 28655 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | || | | || || || ||| ||||| || || | ||||| || || Sbjct 28656 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 28715 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || ||||| |||| ||||| | |||| ||||| Sbjct 28716 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 28775 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 28776 CATCCAGAAGGAGTCGAC 28793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337974403060352