Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4469 178 3e-39 seq570 145 2e-29 seq132 145 2e-29 seq6620 125 2e-23 seq884 114 3e-20 seq1232 96.9 8e-15 >seq4469 Length=16579 Score = 178 bits (196), Expect = 3e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | |||||| | ||||| | || || | | Sbjct 2350 AACTTTATATTTAATTTTTAGTGCTTTTGCGGGTATTGTTGGTACAACTTTATCACTTTT 2291 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| |||||| ||| || || | || ||| ||| | || Sbjct 2290 AATTAGAATGGAATTAGCACAACCGGGTAATCAGATTTTAATGGGAAATCATCAATTATA 2231 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||||||| | ||| |||||||||| |||||||| | | Sbjct 2230 TAATGTAGTTGTAACTGCACATGCCTTTATAATGGTTTTCTTTTTAGTTATGCCTGCCTT 2171 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||||||||| ||||||||||| Sbjct 2170 AATTGGTGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGTGCTCCAGATATGGCTTT 2111 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || ||||| |||||||| ||| |||| || | ||||| Sbjct 2110 TCCACGTATGAATAATATTAGTTTTTGGTTATTACCTCCAGCTTTATT 2063 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 5618 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 5560 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 5559 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 5516 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||||||||||| | || || | |||||| Sbjct 1844 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 1903 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 |||||||| |||| | ||||| ||||||| | |||||||||||| ||||| ||||| Sbjct 1904 TTTATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATTGCCAAATCT 1963 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || |||||||| || || Sbjct 1964 ACTGAAGGTCCTGAATGTGCTTGTACACTTGA---TAATGGTGGATAAACTGTCCAACCT 2020 Query 371542 GT 371543 || Sbjct 2021 GT 2022 Score = 104 bits (114), Expect = 6e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||||||||| || |||||||||||||| || | ||||| || || || || Sbjct 1666 TTCGGGATGACCAAAAAACCAAAATAAATGTTGATATAGTACTGGATCTCCCCCACCAGA 1725 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||||||||| |||| Sbjct 1726 AGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 1769 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 9153 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 9094 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 9093 GTAACATGATGTATAGGGTCTGACAC 9068 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 4952 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 5011 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 5012 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 5071 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 5072 AACGCGTTAGCT 5083 >seq570 Length=29657 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 29046 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 28987 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 28986 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 28927 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 28926 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 28867 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||||||||||| || || | ||| | |||||| Sbjct 28866 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 29274 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29215 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 29214 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 29155 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 29154 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 29095 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||||||||||| || || | ||| | |||||| Sbjct 29094 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 29502 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29443 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 29442 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 29383 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 29382 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 29323 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||||||||||| || || | ||| | |||||| Sbjct 29322 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 28818 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 28759 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 28758 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 28699 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 28698 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 28639 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||||||||||| || || | ||| | |||||| Sbjct 28638 TGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 >seq132 Length=78195 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || ||||| || || || || || || | ||||| ||| || || Sbjct 55236 ACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 55177 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 55176 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 55117 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||| || ||||| | ||| || | |||||||| | Sbjct 55116 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 55057 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||||||||||||||||| Sbjct 55056 CGTGATCGTCTTGCCCGTCA 55037 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || || | ||||| ||| || || Sbjct 54551 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTG 54492 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 54491 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 54432 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||| | ||| || | |||||||| | | Sbjct 54431 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 54372 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| || || | ||| | ||||| Sbjct 54371 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || || | ||||| ||| || || Sbjct 54779 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTG 54720 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 54719 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 54660 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||| | ||| || | |||||||| | | Sbjct 54659 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 54600 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||||||||||||||||| Sbjct 54599 GTGATCGTCTTGCCCGTCA 54581 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || || | ||||| ||| || || Sbjct 55007 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTG 54948 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 54947 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 54888 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||| | ||| || | |||||||| | | Sbjct 54887 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 54828 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||||||||||||||||| Sbjct 54827 GTGATCGTCTTGCCCGTCA 54809 >seq6620 Length=4386 Score = 125 bits (138), Expect = 2e-23 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct 4310 GAAAATTTGTCCATCAGTAATTGATATAACATTAGTTGGGATATAAGCAGAAACATCACC 4251 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| ||| || ||||||| ||| |||| Sbjct 4250 AGCTTGAGTTTCAATAATGGGTAAAGCTGTTAATGAACCTCCACCAATTTTTCTATT 4194 >seq884 Length=21595 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 4826 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 4885 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 4886 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 4945 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 4946 ATGGTCTTGCCCGTCA 4961 >seq1232 Length=16645 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 1445 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 1504 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || |||||| |||||||||| | |||| ||||||||||||||| Sbjct 1505 TCCAGGGGCCTCGTTAGGGCAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 1564 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 1565 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 1597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192400653609536