Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq164 179 3e-40 seq760 111 1e-19 >seq164 Length=50448 Score = 179 bits (198), Expect = 3e-40 Identities = 405/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 4606 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 4665 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 4666 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 4725 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 4726 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 4785 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || ||| ||||| ||||| || | ||| ||||| || || ||||| Sbjct 4786 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT- 4844 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 4845 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 4901 Query 27425 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 4902 TGTGCGCAGCTT--GTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 4959 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| |||||| ||||| | ||| ||||| ||||| |||||||| Sbjct 4960 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 5019 Query 27544 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 27603 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 5020 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 5079 Query 27604 GCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 27663 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 5080 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 5139 Query 27664 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 27723 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 5140 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 5199 Query 27724 AAC 27726 ||| Sbjct 5200 AAC 5202 >seq760 Length=24494 Score = 111 bits (122), Expect = 1e-19 Identities = 208/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 7032 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 7091 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 7092 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 7151 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 7152 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 7211 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 7212 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 7271 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 7272 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 7331 Query 45126 CGCGGC 45131 |||||| Sbjct 7332 CGCGGC 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369468723215264