Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq850 131 6e-26 >seq850 Length=22172 Score = 131 bits (144), Expect = 6e-26 Identities = 199/276 (72%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 |||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 11194 CCATGCACATGTGTGTGGCCTCAATGACCACGGCCACGCCCTTGGGCTCAATGACGCCCA 11135 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| ||||||||||| || | | Sbjct 11134 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAGGCGGCGCGAGAAGA 11075 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || |||| | |||||||| ||||||| Sbjct 11074 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCC 11017 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 11016 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 10959 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 10958 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 10923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187270597597184