Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq132 165 2e-35 seq570 163 6e-35 seq884 140 7e-28 seq1033 113 9e-20 seq326 111 3e-19 seq448 104 5e-17 >seq132 Length=78195 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || || ||||||||||| Sbjct 54557 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54498 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 54497 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54438 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||||| ||| | ||||| | |||||| | || || Sbjct 54437 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 54379 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 54378 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || ||||| || | ||| || || || ||||||||||| Sbjct 55241 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55182 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 55181 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 55122 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||||| ||| | ||||| | |||||| | || || Sbjct 55121 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 55063 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 55062 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || || ||||||||||| Sbjct 54785 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54726 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 54725 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54666 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||||| ||| | ||||| | |||||| | || || Sbjct 54665 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 54607 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 54606 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || || ||||||||||| Sbjct 55013 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54954 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 54953 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54894 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||||| ||| | ||||| | |||||| | || || Sbjct 54893 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 54835 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 54834 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 >seq570 Length=29657 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 29507 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 29448 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 29447 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 29388 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 29387 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 29329 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||| Sbjct 29328 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 28823 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28764 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 28763 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28704 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 28703 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 28645 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||| Sbjct 28644 GTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 29051 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28992 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 28991 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28932 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 28931 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 28873 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||| Sbjct 28872 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 29279 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 29220 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 29219 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 29160 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 29159 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 29101 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||| Sbjct 29100 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 >seq884 Length=21595 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 4796 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4855 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 4856 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 4914 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 4915 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 4974 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 4975 GATCTGCAT 4983 >seq1033 Length=19618 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 11438 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 11497 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 11498 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 11552 >seq326 Length=38572 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 25892 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 25833 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 25832 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 25773 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || |||| | || | |||| || || || |||| || || || || Sbjct 25772 TTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 25713 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 25712 TTACCGGCACCGTT 25699 Score = 93.3 bits (102), Expect = 9e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||||| ||||| ||||| ||| | ||| | ||| || | |||||| || Sbjct 26412 GTGAGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGGGCACCAAG 26353 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 |||||||| | |||| |||||||||||||| || | || ||| || | |||| Sbjct 26352 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCAAGCACAAGGATGTGCGGGTTCAGCCA 26293 Query 315771 TAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGA 315830 | |||||| ||| |||| ||| | || || ||||| ||||| ||||| ||||| || Sbjct 26292 CATAGCGGCAGCGAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 26233 Query 315831 ATGAGT 315836 || || Sbjct 26232 GTGGGT 26227 >seq448 Length=32517 Score = 104 bits (114), Expect = 5e-17 Identities = 291/444 (66%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| | ||||| | || | ||||||| || || || Sbjct 21482 AGACCAACCCGTACCGATACCCTCCGCGCCATTAATGAGCAGCATCGGGATGATAGGCAC 21541 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 ||||| ||||||||| ||||||||||| | || ||| | |||||||| Sbjct 21542 GTAATACACGGGCTCAACGGGGAAACCATCGTCGTCAGCATAGCGCAAGAGCGCATCATC 21601 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 ||| ||| || ||||| || | || |||||| ||||| | | || Sbjct 21602 ATCTTCAGGGAATACAAGACGCGTGTGCTTTTGAAGCAGCGTGAAGATGTAACGAGGGCT 21661 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG---CAGTAGCCA 273856 || || ||||| || || || | | |||||||||||| || ||| ||| Sbjct 21662 AGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACTGACCGGACGGATACAGCAGCGG 21721 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | ||||||| || ||| | ||||| ||||| ||||| || ||| || | || Sbjct 21722 A---AGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCACAATCGTCGAGTGTAACGA 21778 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 ||||||||||||| ||||| ||||||| | |||||| | ||| || ||||| Sbjct 21779 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCAGTAACCAGCAAGCTGTGCCACCTT 21838 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAGGG 274033 ||| |||||||| | || ||||| | | ||| || | |||||| ||||||||| Sbjct 21839 CACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAA---AGCACCTTGCGCTGCGAGAT 21895 Query 274034 CTTGAACCCATCAACGACCGATGG 274057 || | ||||| || || || || Sbjct 21896 TTTAAGTCCATCGACCACTGACGG 21919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046624613459776