Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq132 176 4e-39 seq570 165 8e-36 seq884 154 1e-32 seq1033 134 1e-26 seq760 95.1 1e-14 >seq132 Length=78195 Score = 176 bits (194), Expect = 4e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| ||||||||||||||| |||||| Sbjct 54558 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 54499 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 54498 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54439 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||||| ||| | | | | ||| || ||||| Sbjct 54438 GATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 54380 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 54379 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| ||||||||||||||| |||||| Sbjct 54786 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 54727 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 54726 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54667 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||||| ||| | | | | ||| || ||||| Sbjct 54666 GATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 54608 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || |||||||||||||| || || ||||||||| Sbjct 54607 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54558 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| ||||||||||||||| |||||| Sbjct 55014 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 54955 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 54954 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54895 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||||| ||| | | | | ||| || ||||| Sbjct 54894 GATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 54836 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || |||||||||||||| || || ||||||||| Sbjct 54835 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54786 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||||||| ||||||||||||||| |||||| Sbjct 55241 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55182 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 55181 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 55122 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| ||| | | | | ||| || |||||| Sbjct 55121 ATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 55063 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || |||||||||||||| || || ||||||||| Sbjct 55062 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55014 >seq570 Length=29657 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 28823 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28764 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 28763 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28704 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 28703 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 28645 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || |||||||||||||| |||||||||||||| Sbjct 28644 GTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 28597 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 29051 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28992 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 28991 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28932 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 28931 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 28873 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || |||||||||||||| ||||| |||||||| Sbjct 28872 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 28825 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 29279 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 29220 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 29219 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 29160 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 29159 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 29101 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || |||||||||||||| ||||| |||||||| Sbjct 29100 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29053 Score = 161 bits (178), Expect = 9e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 29507 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 29448 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 29447 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 29388 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 29387 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 29329 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || |||||||||||||| ||||| |||||||| Sbjct 29328 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29281 >seq884 Length=21595 Score = 154 bits (170), Expect = 1e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 4794 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4853 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | || |||||||||| |||||| ||||| || | Sbjct 4854 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 4912 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 4913 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4972 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 4973 AAGATCTGCATG 4984 >seq1033 Length=19618 Score = 134 bits (148), Expect = 1e-26 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 11436 CCACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 11495 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 11496 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 11555 Query 41753 GG 41754 || Sbjct 11556 GG 11557 >seq760 Length=24494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 7241 GGCTGCTACGCGCGCGTGGCGCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACG 7182 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 7181 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 7122 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | ||| |||||| ||||| ||| ||||| || || Sbjct 7121 GCGGCCGAGGACTTCCCCGTCAAGCGCGGAGACCGCGTGGCGCAGCTCATCCTCGAGAAG 7062 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 7061 ATCGAGTACCCGGAGATCCAGGAGGTG 7035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462254625932800