Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq46202 104 2e-17 >seq46202 Length=175750 Score = 104 bits (114), Expect = 2e-17 Identities = 212/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 40723 ATGTACGTGTCAATGAGCAGAGAGTAAACCTCCGAGTGAATGTTCTCGATGGCGATCTGG 40782 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTA 17351 || ||||||||||| || ||||| | | || ||||| || | | || || || | Sbjct 40783 AAGCCGTAAAAGCAACGAGCTTCAGGCACCTGCACTTCATTACTGAAATTCATT--GCCA 40840 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | || |||||||| || || ||||| || ||||| || || | | ||| || ||||| | Sbjct 40841 GGTTCTCGTTCACAATTCCATCGCTGGCAGCGAAGAAGGCAAGCACATGTTTGATGAAGT 40900 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| ||||| || ||||||||| | || | | ||| | || | Sbjct 40901 GACGCTCGTTGTCCGTAAGCTTGCTCCAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCT 40960 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 ||| ||||| || ||| ||||||| |||||||| | ||| | || | | || | Sbjct 40961 CGGCAGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCACACTTCGTGCTCCTGAA 41020 Query 17532 TGGGGAATACAAC 17544 ||||||| | ||| Sbjct 41021 TGGGGAAGAGAAC 41033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517246329256800