Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq46075 113 5e-20 seq46202 86.0 6e-12 >seq46075 Length=65249 Score = 113 bits (124), Expect = 5e-20 Identities = 383/590 (65%), Gaps = 24/590 (4%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | || || | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | ||| || ||||| |||||| ||||| | |||||| | || |||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACA-CGGAGCAGAACGAGCCT 31924 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| || || || || | ||||| || | | || || ||||||| Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTACG-------- 31976 Query 16373 TTATTACGAATCCATTTCTGT-AC-CCATTCGGCTTTTTGTTTTATACAATCC--ATCGT 16428 |||| | || | || || ||||| | | ||| || | ||| | || || Sbjct 31977 -----ACGA-TACACGTGGGTCACACCATTTGAGTGTTTCTTCTGGACACACGGGATGGT 32030 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 || || || || | | ||||| ||| ||| | || ||||| ||||| || Sbjct 32031 CTCGATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAG 32090 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 | ||| | ||| ||||| |||||||| || || ||||| || ||||| ||||| || Sbjct 32091 CAGCGAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCG 32150 Query 16549 AGCCTCCGCTATTTGTACTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATA 16606 ||| || | || || ||||| || || || | ||||| ||||| || |||||| Sbjct 32151 AGCTTCAGGGATCTGCACTTCGTTACTGAAGTTCATG--GCCAGATTCTCGTTGACGATA 32208 Query 16607 CCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTA 16666 |||||||| ||||| || || || | | |||||| ||||| | || | ||| Sbjct 32209 CCGTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTG 32268 Query 16667 AGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTA 16726 || | ||| || || | ||| | || ||||| || || | ||||| ||| Sbjct 32269 AGTTTCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAG 32328 Query 16727 GCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| ||||||| || ||||| | ||| | ||| | | || ||||| || Sbjct 32329 GCCTCTGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAA 32378 >seq46202 Length=175750 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | | ||| | || ||||| |||||||| ||||| ||||| Sbjct 40723 ATGTACGTGTCAATGAGCAGAGAGTAAACCTCCGAGTGAATGTTCTCGATGGCGATCTGG 40782 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC--ACGTAAAATCGTTCCGCCA 16589 || || || ||||| ||||| || | | || ||||| || ||| || || |||| Sbjct 40783 AAGCCGTAAAAGCAACGAGCTTCAGGCACCTGCACTTCATTACTGAAATTCATT--GCCA 40840 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||||| ||||| || || || || ||||| || || || | | || || ||||| Sbjct 40841 GGTTCTCGTTCACAATTCCATCGCTGGCAGCGAAGAAGGCAAGCACATGTTTGATGAA 40898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511118674623200