Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq46202 145 9e-30 seq46075 138 1e-27 seq45717 113 5e-20 >seq46202 Length=175750 Score = 145 bits (160), Expect = 9e-30 Identities = 405/613 (66%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | |||||||| | ||| || | ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| || |||||||| || | |||||| ||||| ||| || || || || ||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGA-GCAGAAAGAGCCCGAGAAGAA 40571 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || ||||||||||| ||||| || | || | || || || || | || Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| ||||| | || ||||| | |||||||| || ||||| || || Sbjct 40632 --GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGC 40688 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | |||| || || || | || || | || || ||||| | ||| || Sbjct 40689 ACGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTA 40748 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| || ||||| || || || ||||| || || | ||| || | Sbjct 40749 AACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGG 40808 Query 24488 AATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| ||| ||| || || || | || || ||||| ||||| || ||| Sbjct 40809 CACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTG 40866 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || || || || || | |||||||| || || | |||| || || || || Sbjct 40867 GCAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTC 40926 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || |||| || | | ||| | || || | ||||| || || ||||||||| Sbjct 40927 CAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || |||||||| | ||| | || || | ||||| || || | ||| || | || || Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAAGCGGTTGGGG 41046 Query 24726 TTTTTTGCAAGGA 24738 || | |||||| Sbjct 41047 TTCTCGACAAGGA 41059 >seq46075 Length=65249 Score = 138 bits (152), Expect = 1e-27 Identities = 373/562 (66%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| || ||||| || ||| | ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGCCT 31924 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| |||||||| ||||| ||||| || | || | ||| | || || || | Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTA--CGACGATA 31982 Query 24306 T-CATGTATC-CACT-TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | || || ||| |||||| ||||| | ||||| || || ||||| Sbjct 31983 CACGTGGGTCACACCATTTGAGTGT--------TTCTTCTGGACACACGGGATGGTCTCG 32034 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 ||||| || ||| | || ||| || ||| || | || || ||||| | || Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || | |||||| || ||||| || || || || || || || || || || | ||| Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGT 24540 || | ||||| ||||| ||| || |||| || | ||| || || || || |||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGT 32212 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 ||||||| || || || || | || || || || || | || | ||| |||| Sbjct 32213 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTT 32272 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||| || |||| ||| | || ||||| || || | ||||| || || |||| Sbjct 32273 TCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCT 32332 Query 24661 CTGCCTTTTTATACATATTCCA 24682 ||||||| || ||||| | ||| Sbjct 32333 CTGCCTTCTTGTACATCTGCCA 32354 >seq45717 Length=39516 Score = 113 bits (124), Expect = 5e-20 Identities = 424/658 (64%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068 ||||| |||| ||| || || ||||| ||||||||||| | ||| || || || || Sbjct 4022 CCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAA 3963 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 || || | || | || ||||| || ||||| ||||| |||||| | | Sbjct 3962 CAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAA 3904 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | || | ||||| || |||||||| |||| | || || || ||| | Sbjct 3903 ACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGC 3844 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 |||| || | || | || |||| ||| | || | || ||| || ||||| ||||||| Sbjct 3843 CCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGG 3784 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAG 54306 | | || || || || ||| ||||| | |||| || || || || ||||| Sbjct 3783 ACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATA- 3725 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || ||| ||| ||||| | |||||| | |||| || || |||||||| Sbjct 3724 -CCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATGCC 3666 Query 54367 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 ||| || |||||| ||| | ||| || ||||| ||||| ||| |||| | Sbjct 3665 CTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAACAAGAAGACAGCTGGGGACGTGGCG 3607 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | |||||||| || | ||||| | |||||||| || | |||| || | || | || Sbjct 3606 TGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTTTGCGACATGAGTTCGT 3547 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 |||| |||| || || || || | | || || || | || ||||| | | || Sbjct 3546 ACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGGATGCCCAGGGCCACACGTAGGATCA 3487 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 | ||||| || | || |||| |||| || | | | |||| ||| | | Sbjct 3486 TTTGCTGCGGACGCTCCACGACCTTGCCATTCACGCGGAAAAGGTAGCCGCGTTCGAGCG 3427 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 | || || |||||||||| ||| ||||| || |||| || || | |||||||| Sbjct 3426 TCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAG 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593378280484800