Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq39983 111 1e-19 seq35973 104 2e-17 seq3294 102 7e-17 seq46143 100 2e-16 seq39238 96.9 3e-15 >seq39983 Length=4479 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | || |||| || | || ||||||||||| ||||| ||||| Sbjct 266 GTTTCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTC 207 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || | ||||||| ||||| ||||| ||| | || || | ||||||||| Sbjct 206 GCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGG 147 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| |||||||| ||||| || ||||| | | ||| | || ||||| Sbjct 146 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 87 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || | ||||||||||||||| || | ||| || || || || ||||| Sbjct 86 CACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq35973 Length=2546 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || || ||||| || ||||| ||||| | Sbjct 145 CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTC 204 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| ||||| || | || || | ||| ||||| || Sbjct 205 AGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGG 264 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || || ||||| || || | | ||| | || |||||| Sbjct 265 ATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 324 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| || || || ||||| || ||||| Sbjct 325 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || |||||||| || ||||| ||||| | Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 432 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| || || || | || || | ||||||||| || Sbjct 433 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 492 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| || ||||| || || | | ||| | || |||||| Sbjct 493 ATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 552 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| || || || || || || ||||| Sbjct 553 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 >seq3294 Length=374 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTT-TTGAATGTTATAGTCCGC 21007 || || ||||| | ||||||| || | ||| |||||||| ||| ||||| ||||| Sbjct 372 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCT 313 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| || | ||||||| ||||| ||||| ||| | || || | ||||||||| || Sbjct 312 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 253 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| ||||| ||||| | | ||| | || |||||| Sbjct 252 GATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 193 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||| || | ||| || || || || ||||| Sbjct 192 GTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 >seq46143 Length=82526 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||||| |||| || |||||||| || ||||| ||||||| | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || | || || | ||||||||| || Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || || || || | | | | | || |||||| Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 41491 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||| ||||| || | || ||||| || || |||||||| Sbjct 41490 TCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq39238 Length=3815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | ||||||| || | || |||||||| || ||||| ||||| Sbjct 3558 GTTACCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTC 3617 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || ||||||||||||| || || || | || || | ||||||||| Sbjct 3618 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 3677 Query 21065 GGGCACGCCTTCCTTGT-CGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCT 21123 || | ||||||||||| | | || ||||| || || | | ||| | || |||| Sbjct 3678 AGGGATGCCTTCCTTGTCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCT 3737 Query 21124 CCGTTTCCACGGTAATGGTCTTGCCGGTT-AACGTTTTGAC-AAATATTTGCAT 21175 || |||| || || |||||||| ||| || || || || ||| || ||||| Sbjct 3738 CCACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422021132902160