Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq46202 266 3e-66 seq46075 217 2e-51 seq46143 161 1e-34 seq35973 140 3e-28 seq44488 131 2e-25 seq43815 131 2e-25 seq39983 131 2e-25 seq3294 129 6e-25 seq39238 127 2e-24 >seq46202 Length=175750 Score = 266 bits (294), Expect = 3e-66 Identities = 428/607 (71%), Gaps = 16/607 (3%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || |||||||||| ||| ||||| | |||||||| || | | || Sbjct 41066 GAGCCGTTCCTTGTCGAGAACCCCAACCGCTTCGTTCTCTTCCCCATTCAGGAGCACGAA 41007 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| ||||| || ||||| ||||| || |||||||| | ||||||| | || ||| Sbjct 41006 GTGTGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTCGATCTG 40947 Query 116696 -TCCAAGGACACGAGCGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 | || | | | || |||||| ||| |||| | ||||||||||| || |||||||| Sbjct 40946 GTGCACGACCTCAAG-GACTGG-AGCAAGCTT-ACGGACAACGAGCGTCACTTCATCAAA 40890 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || ||||| ||||| ||||| |||||||| || || || |||||||| |||| | | Sbjct 40889 CATGTGCTTGCCTTCTTCGCTGCCAGCGATGGAATTGTGAACGAGAACCTGGCAATGAAT 40830 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | || ||||||||| | || || || ||||| |||||||| ||||||||||| Sbjct 40829 TTCAGTAATGAAGTGCAGGTGCCTGAAGCTCGTTGCTTTTACGGCTTCCAGATCGCCATC 40770 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC-----GTGCGCTCTT 116927 |||||| | |||||||| | || || ||||| ||||||||| | ||| | | Sbjct 40769 GAGAACATTCACTCGGAGGTTTACTCTCTGCTCATTGACACGTACATCAAGGACGC-CAT 40711 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | |||||| || | || || || || ||||| || || || |||| |||| | Sbjct 40710 C----GAGAAGGACCATCTGCTGCGTGCAATTGAGACCATCCCTTGTGTCACCAAGAAAG 40655 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | | |||||| | ||| || | | | | || | | | ||||| || ||| Sbjct 40654 CTCACTGGGCGATCAAGTGGTGCGACCCTCGTGTGTCCTCGTACCCGGAGCGTCTCCTGG 40595 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | || || || || || ||| ||||||| |||||| |||| | |||| |||||| | | Sbjct 40594 CTTTTGCTGCAGTAGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATTTTTTGGTTGA 40535 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||||| || || | ||| |||||||||||| | ||||||| Sbjct 40534 AGAAGCGTGGTCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGG 40475 Query 117168 GTCTGCA 117174 | |||| Sbjct 40474 GCATGCA 40468 >seq46075 Length=65249 Score = 217 bits (240), Expect = 2e-51 Identities = 416/610 (68%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||| ||| ||| |||||| | |||||||| || | | || |||||| |||||||| Sbjct 32400 GAATCCCAACCGCTTCGTGCTCTTCCCCATCCAGGAGCACGATGTGTGGCAGATGTACAA 32341 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAGCG 116711 ||||| ||||| || |||||||| | ||||||| |||| || || || | | | | || Sbjct 32340 GAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTGGATCTAGTGCACGATCTCAA-CG 32282 Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||| | | | ||||| ||||| || ||||||||||||||||| ||||| |||| Sbjct 32281 ACTGGGCGAAACTCACAGACAATGAGCGTCACTTCATCAAGCACGTGCTCGCCTTCTTCG 32222 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | ||||| ||||| ||||||||||||||||||| | | ||| | | || |||||| Sbjct 32221 CTGCCAGTGACGGTATCGTCAACGAGAATCTGGCCATGAACTTCAGTAACGAAGTGCAGA 32162 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | | || || || ||||| || ||||| |||||||| || |||||| | ||||||||| Sbjct 32161 TCCCTGAAGCTCGCTGCTTTTATGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAG 32102 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 | || ||| || || ||||||||| | | ||| |||||| || | | Sbjct 32101 TCTACTCGCTGCTTATTGACACGTACATCAAGGATGCGGTGGAGAAAGACCACCTCCTTC 32042 Query 116952 ACGCCATCGAGACGATGCCGTGCGTC--AAAGAGAAGGCCGAGTGG-GCGCTGCGC-TGG 117007 || |||||||| || ||||| ||| |||| | | | ||| | | | | || Sbjct 32041 GAGCTATCGAGACCATCCCGTGTGTCCAGAAGAAACACTCAAATGGTGTGACCCACGTGT 31982 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 |||| || | || ||||| ||| | || || || || || || || Sbjct 31981 ATCGTCG--------------TACGCAGAGCGTCTGCTAGCGTTTGCTGCAGTGGAAGGA 31936 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || ||| ||| | || | || ||||||||||| || || || ||||| Sbjct 31935 ATCTTCTTCTCAGGCTCGTTCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACTTATGCCT 31876 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 ||||| | ||| ||||| | || | ||||||||| |||| ||||| || Sbjct 31875 GGCCTAAGCTTCTCGAACGAAATGATTAGTCGCGACGAGGGTATGCACACGGACTTCGCG 31816 Query 117188 TGTTTGCTGT 117197 || || ||| Sbjct 31815 TGCCTGATGT 31806 >seq46143 Length=82526 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || ||||||||||||||||| ||||||| || | Sbjct 41441 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAGCCG 41500 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||| | ||||| || |||||||| | ||| Sbjct 41501 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGAC 41560 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || || | ||||| || |||||| Sbjct 41561 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGACTAC 41620 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || |||||||| || | || || ||| Sbjct 41621 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGTTGCGTCTGCGTGGTGGTGGC 41674 >seq35973 Length=2546 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 599 ATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 540 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| ||||||||| ||||| || |||||||| | ||||| Sbjct 539 GACTCGATCGACAACG-TCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCA 481 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 480 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 421 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || || ||| | ||| || | || ||| Sbjct 420 CATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 372 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | ||||| || | | Sbjct 371 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 312 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| ||||||||| || || || |||||||| | ||||| Sbjct 311 GACTCGATCGACAACG-TCAAGCAAAAAATTCAGGATAAGGAAGGCATCCCTCCTGACCA 253 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 252 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACGCTGAGCGACTACAA 193 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| ||||| ||| | ||| || | || ||| Sbjct 192 CATCCAGAAGGAATCAACGCTTCATCTGGTGCTTCGCCTGCGTGGTGGC 144 >seq44488 Length=18910 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || ||||| |||||||| || ||||| |||| || || | Sbjct 18668 AAAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAGCCG 18727 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| || |||| ||||| ||||||||||| | ||| Sbjct 18728 TCGGACTCGATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 18787 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| || ||||| ||||| || |||| || || || | ||||||| Sbjct 18788 CAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTAC 18847 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || || ||| | ||| || | || || Sbjct 18848 AACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGG 18897 >seq43815 Length=14243 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| | ||||| || | || Sbjct 5058 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5117 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||||| ||||| ||||| ||||| | |||||| Sbjct 5118 GACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCAG 5177 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 5178 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 5237 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 5238 ATCCAGAAGG 5247 >seq39983 Length=4479 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||| ||| | ||||| || | | Sbjct 36 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 95 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| | ||||| Sbjct 96 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 154 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || || || | ||||||||| Sbjct 155 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAA 214 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| | || || || || || |||| Sbjct 215 CATCCAAAAGGAGTCGACACTCCACCTGGTTCTGCG 250 >seq3294 Length=374 Score = 129 bits (142), Expect = 6e-25 Identities = 169/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||| ||| | ||||| || | | Sbjct 145 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 204 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| || |||| ||||| ||||||||||| | ||||| Sbjct 205 GACTCGATCGACAACG-TGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 263 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || || || | ||||||||| Sbjct 264 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAA 323 Query 40869 CATCC-AGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| |||||||| | || || || || ||| | ||| || | || ||| Sbjct 324 CATCCAAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 373 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| | |||||||| || ||||||| || ||||| Sbjct 1 AAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAG 60 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| || || || | |||||||||||||||||||||| | || || || Sbjct 61 CAGCTTGAGGACGGTCGTACTCTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 120 Query 40894 CTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||| | ||| || | || ||| Sbjct 121 CTGGTGCTTCGCCTGCGTGGTGGC 144 >seq39238 Length=3815 Score = 127 bits (140), Expect = 2e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATT-CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 |||| ||||| |||||||| | ||||| || |||||||| | |||||||| || || | Sbjct 3717 AACG-TCAAGCAAAAAATTACAGGACAAGGAAGGCATCCCTCCTGACCAGCAGCGTCTGA 3659 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || |||||||| |||| ||||| || | |||||||||||||||||||| Sbjct 3658 TCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGG 3599 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || | ||||| || || ||| | ||| || | ||||| Sbjct 3598 AGTCAACGCTTCACCTGGTGCTTCGCCTGCGTGGCGG 3562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514921274497600