Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq46143 147 2e-30 seq39983 123 3e-23 seq44488 122 1e-22 seq43815 122 1e-22 seq3294 109 6e-19 seq35973 107 2e-18 seq39238 105 8e-18 seq32256 84.2 2e-11 seq30639 82.4 9e-11 seq17391 82.4 9e-11 >seq46143 Length=82526 Score = 147 bits (162), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||| |||| || |||||| || || ||||| || | |||||| || | Sbjct 41659 ACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 41600 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||| Sbjct 41599 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 41540 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| |||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 41539 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 41481 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||||||||| || ||||| || || || |||||||| Sbjct 41480 TGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq39983 Length=4479 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||| || | ||| ||||||||| || ||||| || |||||| || | Sbjct 251 ACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACC 192 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || ||||| ||||||||||| | ||| | || |||||| Sbjct 191 GTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 132 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| || | || | Sbjct 131 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAA 73 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| |||||||| || ||||| ||||| Sbjct 72 TGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq44488 Length=18910 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||||| || |||| || |||||||| || || || Sbjct 18862 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 18803 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | ||| | || |||||||||| ||| | || | || | Sbjct 18802 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTAGACTTCACAT 18744 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || ||||||| |||||| || |||||||| |||||||| | Sbjct 18743 TGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCA 18684 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| |||||||| Sbjct 18683 CGAAGATCTGCATTTT 18668 >seq43815 Length=14243 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| |||||||| | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | |||||||||| ||||| || |||| | | | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGA-CATTG 5129 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | ||||| || ||||| || | ||||||||| |||||||| | ||||| ||| Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 5068 AAGATCTGCAT 5058 >seq3294 Length=374 Score = 109 bits (120), Expect = 6e-19 Identities = 143/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42992 CTCCTT-TTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGA 43050 |||||| ||| || ||||| || |||||| || |||| || |||||||| || || | Sbjct 337 CTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAA 278 Query 43051 ATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 43110 | ||||| ||||||||||| | ||| | || |||||||||| ||| | || | | || Sbjct 277 AGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTAGACTTCACG 219 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | || ||| || ||||| || | || ||||| |||||||| |||||||| Sbjct 218 TTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTC 159 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 158 ACGAAGATCTGCAT 145 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||||| || |||| || |||||||| || || || Sbjct 108 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 49 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||| ||||||||||| | ||| | || |||||||||| Sbjct 48 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 9 >seq35973 Length=2546 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 408 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAA 467 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||||||||| |||||||| |||| ||| Sbjct 468 GATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGA-CGT 526 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || ||||| || | ||||| | Sbjct 527 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCA 586 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 587 CGAAAATCTGCAT 599 >seq39238 Length=3815 Score = 105 bits (116), Expect = 8e-18 Identities = 145/196 (74%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 3597 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAA 3656 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC-ATGATTTTTTGTTTGAGCG 43110 || || ||||||||||| | || | || ||||||||| | |||||||| |||| || Sbjct 3657 GATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTAATTTTTTGCTTGA-CG 3715 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT-AGCGTCTT 43168 | | | | || ||| | ||||| || | |||||| || ||||| ||| | ||||| Sbjct 3716 TTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTT 3775 Query 43169 TAC-AAAGATTTGCAT 43183 || |||||| ||||| Sbjct 3776 CACAAAAGATCTGCAT 3791 >seq32256 Length=1872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 || |||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 651 CGTCAGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 710 Query 60131 CCGAGGATT 60139 |||| ||| Sbjct 711 GCGAGAATT 719 >seq30639 Length=1666 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60070 TCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACT 60129 ||| | |||||| |||||| |||| |||||||||||||||| ||||| ||||||||||| Sbjct 465 TCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACT 524 Query 60130 ACCGAGGATT 60139 | |||| ||| Sbjct 525 AACGAGAATT 534 >seq17391 Length=796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60070 TCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACT 60129 ||| | |||||| |||||| |||| |||||||||||||||| ||||| ||||||||||| Sbjct 114 TCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACT 55 Query 60130 ACCGAGGATT 60139 | |||| ||| Sbjct 54 AACGAGAATT 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571486946472800