Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq35973 143 2e-29 seq39983 136 3e-27 seq44488 134 9e-27 seq39238 129 4e-25 seq43815 127 1e-24 seq3294 123 2e-23 seq46143 120 2e-22 >seq35973 Length=2546 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| || | || ||| ||||| |||||||||||| | Sbjct 145 CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTC 204 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| |||| |||| ||||||||| ||||| || || ||||| ||||| || Sbjct 205 AGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGG 264 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || || |||||||| | | | | ||||| || | | || ||| Sbjct 265 ATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 324 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || |||||||| | ||| ||||||||||||||||| Sbjct 325 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 432 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| |||||| || ||||| || || ||||||||||| || Sbjct 433 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 492 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || |||||||| | | | | ||||| || | | || ||| Sbjct 493 ATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 552 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || |||||||| | ||| ||||| || |||||||| Sbjct 553 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 >seq39983 Length=4479 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||||||||| || | ||| |||||||| | || || || || |||||||||||| Sbjct 263 TCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCT 204 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| |||| || | ||||||||| || || ||||| ||||||||||| | ||| Sbjct 203 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 144 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||||| | | | | ||||| || | || || | Sbjct 143 G-ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 85 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | || ||||| ||||| || || || ||||| ||||||||||| Sbjct 84 CGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq44488 Length=18910 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 18897 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 18838 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| || | ||||||||| || || ||||| ||||||||||| | |||| Sbjct 18837 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 18778 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | ||||| || | || || || Sbjct 18777 -ATGCCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTAC 18719 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || ||||| ||||||||||| Sbjct 18718 ATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 >seq39238 Length=3815 Score = 129 bits (142), Expect = 4e-25 Identities = 169/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | || || ||||| |||||||||||| | Sbjct 3562 CCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3621 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| |||||| || ||||| || || ||||||||||| || Sbjct 3622 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 3681 Query 34283 ACGCTCTCCTTGT-CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||| | | || |||||||| | | | | ||||| || | | || || Sbjct 3682 ATGCCTTCCTTGTCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCAC 3741 Query 34342 GTCCACCGTGATGGTTTTGCC-GGTGAGAGTTTTCAC-AAAGATCTGCAT 34389 ||||| |||||| || ||||| | | | ||| ||||| |||||||||||| Sbjct 3742 GTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 >seq43815 Length=14243 Score = 127 bits (140), Expect = 1e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | | ||||||||| || || ||||| | || | | Sbjct 5185 AGACGCTGCTGGTCAGGCGGG-ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTC 5127 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| ||||| || | || |||||||| Sbjct 5126 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 5067 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 5066 GATCTGCAT 5058 >seq3294 Length=374 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCT-GTATGTTGTAGTCGGA 34221 || || ||||| | ||||||||||| | ||| || |||| | |||||||||||| Sbjct 372 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCT 313 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| |||| || | ||||||||| || || ||||| ||||||||||| | ||| Sbjct 312 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 253 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||| | | | | ||||| || | || || | Sbjct 252 G-ATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCA 194 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | || ||||| ||||| || || || ||||| ||||||||||| Sbjct 193 CGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 143 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 84 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| || | ||||||||| || || ||||| ||||||||||| | |||| Sbjct 83 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 24 Query 34282 CACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 23 -ATGCCCTCCTTGTC 10 >seq46143 Length=82526 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||||||| | || || ||||| ||||||||||| ||| Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | || | | || || | || || || Sbjct 41550 -ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 41492 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | ||||||||||||||| || || || || || || |||||||| Sbjct 41491 GTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322889854025600