Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq46202 104 2e-17 >seq46202 Length=175750 Score = 104 bits (114), Expect = 2e-17 Identities = 348/539 (65%), Gaps = 6/539 (1%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| || ||||| | ||| || | |||||| || || | ||||| ||||| || || Sbjct 40468 TGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGACCA 40527 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 || || || | |||||| || | | || || || || ||||| || ||||| ||||| Sbjct 40528 CGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCTACTGCA 40587 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 ||||| || | | ||||| ||||| | || ||| || | ||| Sbjct 40588 GCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTCGCACCACTTGATCGCC 40647 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 || | ||||| | | ||||| ||| |||| |||||| | | || | || Sbjct 40648 CAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCACGCAGCAGATGGTCCTTC 40707 Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 || || || || || || || || || | | || | || || ||||| ||| Sbjct 40708 TCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTAAACCTCCGAGTGAATGTTC 40767 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAG-AGTA 16608 || || || ||||| || || |||||||| | |||||| | | || |||||| | | Sbjct 40768 TCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGCACCTGCACTTCATTACTG 40827 Query 16609 AAACCTTTC--TGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 ||| ||| ||| | ||| ||||| || ||||||||||| || || || || ||||| Sbjct 40828 AAA---TTCATTGCCAGGTTCTCGTTCACAATTCCATCGCTGGCAGCGAAGAAGGCAAGC 40884 Query 16667 ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTT 16726 | ||||| || || | ||||| || | ||| || |||||| | || | Sbjct 40885 ACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTCCAGTCCTTGAGGTCGTGC 40944 Query 16727 GATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCA 16785 | ||||| ||| || ||||||| || || || | ||||| |||||||| | ||| Sbjct 40945 ACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCA 41003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244552436000