Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq44985 125 6e-24 >seq44985 Length=24218 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| |||| || || || ||| | ||||| || ||||| || ||| |||||||| Sbjct 8178 ATGGCACTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCAATGGGGAATTGTCT 8237 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || ||||||||||| || || || || |||||||| ||||| |||||||| || || || Sbjct 8238 TGCCAAATGTATCAGCGCTCGGCCGACATGGGACTTGGTGTACCTTTCAACATCGCCAGC 8297 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580 || ||||| |||||| || | ||||| || |||| |||| | || || || || Sbjct 8298 TACGCGCTTCTTACGCGACTGGTAGCACAAGTGACAGGCCTAAAGCCTGGCGAGTTTATC 8357 Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 ||| ||| || || || || | || || || ||| | ||||| Sbjct 8358 CACGTCATCGGTGATGCACACGTGTATCTAAACCATGTGGAACC 8401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398958942555700