Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq46202 120 7e-22 seq45717 116 8e-21 seq46075 84.2 5e-11 seq45882 84.2 5e-11 >seq46202 Length=175750 Score = 120 bits (132), Expect = 7e-22 Identities = 258/379 (68%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 254004 CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTG 254063 || || ||||| ||| |||| ||||| || || ||||||||||| |||||| | || || Sbjct 135117 CCCCACTTGCTCTTCTACGGACCTCCGGGCACGGGCAAGACGTCCACCATCGTAGCTGTG 135176 Query 254064 GCCCGA-ACCCTGTTGGGCGAGGGGAACATGAGAGAG--CGCGTGCTCGAGCTGAACGCT 254120 | || | | | |||| | | | | ||| | ||| | || ||||||||||| Sbjct 135177 GGTCGCCAGCTTTTTGGACCGGACTTCCGTAAGAACGGTCGCTTCCTGGAGCTGAACGCG 135236 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG 254180 || || || || || | | || || || || ||| |||||| ||| || || || Sbjct 135237 TCAGATGACCGAGGCATCAAGGTGGTGCGTGAAAAGGTCAAGAGCTTCGCCCAG-GGTGC 135295 Query 254181 ATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGAC 254240 | | | | ||| |||| || || |||||| || | | || || ||||| || Sbjct 135296 AATCAGCAGCGCCA--GCGGCCTGCCACCGTTCAAGATCATCGTGCTCGATGAGGCCGAT 135353 Query 254241 ACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTG 254300 | ||||| | |||||| ||||| || || || || | |||||||| ||||| || Sbjct 135354 TCTATGACCGGCGACGCACAGTCTGCTCTGCGTCGCATGATGGAGAATTACTCCAAGGTC 135413 Query 254301 ACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTC 254358 ||||| |||||||| | || |||||||| ||||| ||||| | || |||| || | Sbjct 135414 ACGCGCTTTTGCCTTATTTGTAACTACGTGAGTCGA--ATCATTGAGCCTGTGGCCTCGC 135471 Query 254359 GGTGCGCCAAGTTTCGATT 254377 | |||||||| ||||| || Sbjct 135472 GATGCGCCAAATTTCGTTT 135490 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||||| ||||| || ||||| ||||||||||| ||| Sbjct 40153 ACGCCAGCCTTGGAGTACTCGCCCACTCGTTTCTCGAAGAAGTTCGTCTTTCCCTGAAGA 40212 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 ||||||||||||||||| ||||| ||||| Sbjct 40213 GAAATCATGTCCATCCAGTCGAACGGGTT 40241 >seq45717 Length=39516 Score = 116 bits (128), Expect = 8e-21 Identities = 394/606 (65%), Gaps = 17/606 (3%) Strand=Plus/Plus Query 248870 ATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACA 248929 |||||||| ||||||| || ||||| ||| | | || ||||| | || || |||| Sbjct 3457 ATGGCAAGGTCGTGGAGCGTCCGCAGCAAATGATCCTACGTGTGGCCCTGGGCATCCACA 3516 Query 248930 AGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACAC 248989 || ||||| | || ||||| |||||| ||| || | | || | Sbjct 3517 AGAGCGACATCACGTCCGCACTCGAAACGTACGAACTCATGTCGCAAAAGTTCTTCACGC 3576 Query 248990 ATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTGC 249045 | ||||| || || |||||||| || || || |||| || |||| || || Sbjct 3577 ACGCCACCCCTACTCTCTTCAATGCGGGCACGCCACGTCCCCA----GCTGTCTTCTTG- 3631 Query 249046 TTTCTTCTTGCC-ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 |||| ||||| | ||||| || ||||| |||| ||||| || ||||| || || || Sbjct 3632 TTTCCTCTTGGCTATGCAGGATGACTCGATCGAGGGCATCTACGACACTCTAAAGCAATG 3691 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || || || |||| |||||||| |||||| || | ||||||||| || | Sbjct 3692 CGCCTGTATCTCGAAATGGGCGGGCGGCATCGGTATCAGTATGCACAACATCCGCGCCAC 3751 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCCTTCGA 249222 |||||| || || || || || || |||| || | ||| | || || Sbjct 3752 TAACAGCTACATCCGTGGCACGAACGGC-TC-GTCCAATGGCATTATCCCCATGCTGCGT 3809 Query 249223 TGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTC 249279 ||| | ||| || | | | |||||| ||| | || ||||| || ||| Sbjct 3810 GTGTTTAACGACACAGCGCGCTATGTGGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTTC 3869 Query 249280 GCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAAC 249339 ||||| || ||||| ||||||||||| | || ||||||||||| || |||||| Sbjct 3870 GCCATCTACTTGGAGCCTTGGCACGCCGACGTGTTTGAGTTCCTGGATCTGCGTAAGAAC 3929 Query 249340 AACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTG 249399 |||||||||| ||| | || || ||| | ||||||| || ||||| | || | Sbjct 3930 CACGGCAACGAACTCCACCGCGCCCGCGACTTGTTCTACGCGCTCTGGGTGCCTGATCTC 3989 Query 249400 TTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCG 249459 |||||| ||||| ||||| ||||| | |||| || | | ||| ||| |||||| Sbjct 3990 TTCATGAAGCGCGTAGAGGCCAACGGCAAGTGGAGTCTCTTCTGTCCTAACGAAGCCCCG 4049 Query 249460 GACCTC 249465 | |||| Sbjct 4050 GGCCTC 4055 >seq46075 Length=65249 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| |||| | ||||| || ||||| ||||| ||||| || || |||||||||||| Sbjct 31529 TACTCGCCCACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGTAGTGAGATCATGTCCATC 31588 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTAC-CCCAGCTGGTTCAGCCAGTA 157377 || ||||||||||| |||||| | |||| ||| ||||| || ||| || Sbjct 31589 CAGTCGAATGGGTTCTTCACGTTGTAGATCTTG-GATACACCCAGTGAGTACAG-AAGAC 31646 Query 157378 G-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 | || |||||||||| ||||||| |||| | | | | || ||||||||| | | Sbjct 31647 GATCTGCCACAAACTCAATGTACTGACACATGAGCGCCGAGTTCATGCCGATGAGCTCCA 31706 Query 157437 CGGGAAG 157443 | || || Sbjct 31707 CCGGGAG 31713 >seq45882 Length=47498 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || ||||| | ||| || || ||||||||||| ||||| |||||||| ||| | | ||| Sbjct 21141 ATGGCACAGCGGCTTTGGATAGGTTCGATGATCTTGGTCGAGTTGTTACAGGCCA--ATG 21084 Query 115462 --AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAG 115519 || ||||||||| |||| | | ||||| | || || || ||||| || | | Sbjct 21083 CAAAGCGCGTCGTGGCCGAGAAGATCTCCATTGTGCGACGTAGAGCCTGTTGGGCTGCCG 21024 Query 115520 GTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||||| ||||| || |||| ||| ||||| Sbjct 21023 CGGTCATGGAGTCCGCCTCATCCAGAATGACGATCTT 20987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073129971943680