Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq35973 150 1e-31 seq39238 131 1e-25 seq39983 122 7e-23 seq43815 120 2e-22 seq46143 109 4e-19 seq44488 105 5e-18 seq3294 82.4 6e-11 >seq35973 Length=2546 Score = 150 bits (166), Expect = 1e-31 Identities = 165/218 (76%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 391 ACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 450 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| ||||| | || ||||||||| | Sbjct 451 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 510 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 511 ATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 570 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT-GTTGCCTC 45344 || |||| ||||||||| || || ||||| |||||||| Sbjct 571 CCGGTCAAAGTCTTCACGAAAATCTGCATAGTTGCCTC 608 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| |||||||| |||||||||||| |||| || |||| ||| Sbjct 163 ACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTCC 222 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||||||||| ||||| | || ||||| ||| | Sbjct 223 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGA 282 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 283 ATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 342 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||||||||||||| |||||| Sbjct 343 CCGGTCAAAGTCTTCACAAAGATCTGCATG 372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || ||||| |||| ||||||||||| ||||| | || ||||||||| |||||||||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | ||| | |||||| |||| || ||||||||||| |||| | Sbjct 64 TTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAA 123 Query 45317 GTCTTCACAAAGATTTGCATG 45337 ||||||||||| || |||||| Sbjct 124 GTCTTCACAAAAATCTGCATG 144 >seq39238 Length=3815 Score = 131 bits (144), Expect = 1e-25 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 3580 ACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 3639 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC-GC 45246 || || || || ||||| |||| ||||| ||||| ||||| | || ||||||||| | Sbjct 3640 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGT 3699 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||||||||| || | | ||| | |||||| |||| || |||||||| Sbjct 3700 AATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTT 3759 Query 45307 GCCCG-TCAGAGTCTTCAC-AAAGATTTGCATG 45337 ||| | | | ||||||||| |||||| |||||| Sbjct 3760 GCCAGTTAAAAGTCTTCACAAAAGATCTGCATG 3792 >seq39983 Length=4479 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||| || |||||||||||| |||| ||| |||| || Sbjct 244 ACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCA 185 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | |||||||||||| | Sbjct 184 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 125 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | |||||| |||||| Sbjct 124 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTG 65 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| ||||| |||||| Sbjct 64 CCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq43815 Length=14243 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || || ||||| | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| |||||| ||||| || Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT 5128 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || ||||||||||||| |||||||||| Sbjct 5127 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5068 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 5067 AGATCTGCATG 5057 >seq46143 Length=82526 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| |||||| || ||||||||| ||||||||||| ||| ||| | || Sbjct 41655 AACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 41596 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || |||||||| |||| ||||| ||||| || || | || ||||||||| Sbjct 41595 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 41536 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| || | | ||||||| |||||| || | || || || Sbjct 41535 TGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTT 41476 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| || ||||| || || || ||||| || Sbjct 41475 TTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq44488 Length=18910 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| |||| || Sbjct 18879 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCA 18820 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | |||||||||||| | Sbjct 18819 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 18760 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||| || || | || || |||||| Sbjct 18759 ATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTG 18700 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 18699 CCCGTCAGCGTCTTCACGAAGATCTGCATTTTG 18667 >seq3294 Length=374 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| |||| || Sbjct 125 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCA 66 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | |||||||||||| | Sbjct 65 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 6 Query 45248 ATTTT 45252 || || Sbjct 5 ATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394852459071460