Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq46202 168 8e-37 seq46075 158 2e-33 seq45717 98.7 1e-15 >seq46202 Length=175750 Score = 168 bits (186), Expect = 8e-37 Identities = 394/589 (67%), Gaps = 13/589 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||||| |||||||| | ||| || | ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || | |||||| ||||| ||| || || || |||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAAG 40572 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-----TCCATAACCGGCG-CTGTCA 33755 || ||||||||||||||||| || | || | ||| | | || || ||| Sbjct 40573 ATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC- 40631 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | | |||||| ||||| | || ||||| | |||||||| || || || || ||| Sbjct 40632 -GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCA 40689 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | |||| || || || | || || | || || || || | ||| || Sbjct 40690 CGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTAA 40749 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 | ||||| |||||||| || ||||| ||||| || ||||| || || | ||| || | Sbjct 40750 ACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGC 40809 Query 33936 ATCTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||||||||| ||| ||| || | ||| | || || ||||| |||||||| |||| Sbjct 40810 ACCTGCACTTCATTACTGAAATTCAT--TGCCAGGTTCTCGTTCACAATTCCATCGCTGG 40867 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || || | |||||||| || || | |||| || || || ||| Sbjct 40868 CAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTCC 40927 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || |||| || | | ||| | || || | ||||| || || |||||||||| Sbjct 40928 AGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCT 40987 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||||| | ||| | || || | || || ||||| | ||| || Sbjct 40988 TCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAA 41036 >seq46075 Length=65249 Score = 158 bits (174), Expect = 2e-33 Identities = 402/606 (66%), Gaps = 17/606 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||||| || ||||| || ||||| ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || | Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTG 31925 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-G 33752 | |||||||||||||| ||||||||||| || | || | |||| | || || || | Sbjct 31926 AGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTA--CGACGATAC 31983 Query 33753 TCATGTATC-CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | || || || | ||||| | ||||| | ||||| || || || || | Sbjct 31984 ACGTGGGTCACACCATTTGA--------GTGTTTCTTCTGGACACACGGGATGGTCTCGA 32035 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || || ||| | || ||| || ||| || | || || || || | || Sbjct 32036 TAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGCG 32095 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 || | |||||| || ||||| || || || ||||| || || || || || | ||| | Sbjct 32096 AGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCTT 32155 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCATC 33988 | | ||||||||||| ||| || |||| || | ||| || || || || || || Sbjct 32156 CAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGTC 32213 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 |||||| || || || || | || || || || || | || | ||| ||||| Sbjct 32214 ACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTTT 32273 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 ||| || |||| ||| | || ||||| || || | ||||| || || ||||| Sbjct 32274 CGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCTC 32333 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 |||||| || ||||| | ||| | || || | ||||| ||||| | || || | || Sbjct 32334 TGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGTT 32393 Query 34169 TGGATT 34174 ||||| Sbjct 32394 GGGATT 32399 >seq45717 Length=39516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 765/1224 (63%), Gaps = 16/1224 (1%) Strand=Plus/Minus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || ||||| || ||||| ||||| || | ||||| |||| |||||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 || | | || || ||||| || | |||||||| ||||| || ||||| | ||| | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62927 || | ||| || |||||||| || | || ||| | | || || | || Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 || ||| | | || || || || | || ||||| || ||||||| || | | Sbjct 4342 ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTA 4283 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 || | || | || ||| | || || | || || || || || ||||| || Sbjct 4282 TACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTC 4223 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||| ||| || ||||| || || || || || ||||| || ||||||| Sbjct 4222 GACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCG 4163 Query 63108 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63165 || | || || ||| | | || | || || || | | | | ||||| || Sbjct 4162 TCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT-CTG 4105 Query 63166 TTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 | ||||| | ||| | | | |||||||||||| ||||| | || | | || Sbjct 4104 TCTCGTACTTTTCGTACAGAGT--TTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGG 4047 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 ||| | ||||| | | ||||| |||| ||| || || ||||| ||||| Sbjct 4046 GGCTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAG 3987 Query 63284 ATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 |||||| | ||| || || || || || || | | | || ||||| || | Sbjct 3986 ATCAGGCACCCAGAGCGCGTAGAACAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCGTGGT 3928 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 |||| ||||| |||||| | | | || | ||||| || |||||||| ||||| | Sbjct 3927 TCTTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGA 3868 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 || || || ||| ||||| || | || | || |||| ||| | || | Sbjct 3867 AGGAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACAC 3808 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 || ||| || ||||| || || || || || || || ||| |||| | ||| Sbjct 3807 GCAGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGG 3748 Query 63523 CACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 | || || | | | | |||| ||| || || || ||| ||| ||||| | ||||| Sbjct 3747 CGCGGATGTTGTGCATACTGAT--ACCGATGCCGCCCGCCCATTTCGAGATACAGGCGCA 3690 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAAC 63639 | | |||| ||||| |||||||| || || ||||| ||| | ||| || |||| Sbjct 3689 TTGCTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAAC 3631 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| |||| | || |||||||| || | ||||| | |||||||| | Sbjct 3630 AAGAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGA 3571 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | | |||| || | || | |||||| || | || || || || | | || | Sbjct 3570 AGAACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGGA 3511 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 | || | || ||||| | | ||| ||||| || | || || | ||| || | Sbjct 3510 TGCCCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTCACGC 3451 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 || | |||| ||| | || || || |||||||||| ||| ||||| || | Sbjct 3450 GGAAAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGGT 3391 Query 63880 CGTAAATAATAACCGAATTGAGCT 63903 ||| || || |||| ||||||| Sbjct 3390 CGTGGATGATGGCCGAGTTGAGCT 3367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629453407972800