Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq46202 158 2e-33 seq46075 143 4e-29 seq45717 125 9e-24 >seq46202 Length=175750 Score = 158 bits (174), Expect = 2e-33 Identities = 394/590 (67%), Gaps = 15/590 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| | |||||||| | ||| || | ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| || |||||||| || | |||||| ||||| ||| || || || || ||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGA-GCAGAAAGAGCCCGAGAAGAA 40571 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 36330 || ||||||||||| ||||| || | || | ||| || || ||| ||| Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | | |||||| ||||| | || ||||| | |||||||| || ||||| || || Sbjct 40632 --GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGC 40688 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | | |||| || || || | || || | || || ||||| | ||| || Sbjct 40689 ACGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTA 40748 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 | ||||| |||||||| || ||||| || || || ||||| || || | ||| || | Sbjct 40749 AACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGG 40808 Query 36511 AATCTGTACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | ||| ||||| ||| ||| || || || | || || ||||| ||||| || ||| Sbjct 40809 CACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTG 40866 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 || || || || || | |||||||| || || | ||||| || || || || Sbjct 40867 GCAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTC 40926 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || || |||| || | | ||| | || || | ||||| || || ||||||||| Sbjct 40927 CAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || |||||||| | ||| | || || | ||||| || || | ||| || Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAA 41036 >seq46075 Length=65249 Score = 143 bits (158), Expect = 4e-29 Identities = 374/562 (67%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| || ||||| || ||| | ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGCCT 31924 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACT 36327 || ||||| |||||||| ||||| ||||| || | || | |||| | || || || Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTACGACGATACA 31984 Query 36328 GTCATGTATC-CACT-TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || || ||| |||||| ||||| | ||||| || || ||||| Sbjct 31985 --CGTGGGTCACACCATTTGAGTGT--------TTCTTCTGGACACACGGGATGGTCTCG 32034 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||||| || ||| | || ||| || ||| || | || || ||||| | || Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || | |||||| || ||||| || || || || || || || || || || | ||| Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGT 36563 || | ||||| ||||| ||| || |||| || | ||| || || || || |||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGT 32212 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 ||||||| || || || || | || || || || || | || || ||| |||| Sbjct 32213 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTT 32272 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||| || |||| ||| | || ||||| || || | ||||| || || |||| Sbjct 32273 TCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCT 32332 Query 36684 CTGCCTTTTTATACATATTCCA 36705 ||||||| || ||||| | ||| Sbjct 32333 CTGCCTTCTTGTACATCTGCCA 32354 >seq45717 Length=39516 Score = 125 bits (138), Expect = 9e-24 Identities = 765/1219 (63%), Gaps = 10/1219 (1%) Strand=Plus/Minus Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || ||||| |||||||| ||||| || | ||||| |||| | |||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 || | | || || ||||| || | |||||||| ||||| || ||||| | ||| | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT 65720 || | ||| || |||||||| || | || ||| | | || || | || Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 || ||| | | || || || || | || || || || ||||||| || | | Sbjct 4342 ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTA 4283 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 || | || | || ||| | || || | ||||| || || || ||||| || Sbjct 4282 TACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTC 4223 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||| ||| || ||||| || || || || || ||||| || ||||||| Sbjct 4222 GACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCG 4163 Query 65901 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 65958 || | || || ||| | | || | || || || | | | | || || || Sbjct 4162 TCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT-CTG 4105 Query 65959 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 66018 | ||||| | |||| |||||||||||| ||||| | || | || || Sbjct 4104 TCTCGTACTTTTCGTACAGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGG 4045 Query 66019 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 66078 ||| | ||||| | | ||||| |||| ||| || || ||||| ||||||| Sbjct 4044 CTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGAT 3985 Query 66079 CAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138 |||| | ||| || || || || || | || | || ||||| || |||| Sbjct 3984 CAGGCACCCAGAGCGCGTAGAACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCT 3925 Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198 | ||||| |||||| | | | || ||||| || |||||||| ||||| | Sbjct 3924 TACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGG 3865 Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258 || || || ||| ||||| || | || | || |||| ||| | || | || Sbjct 3864 AGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCA 3805 Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318 ||| || ||||| |||||||| | || || || || ||| ||||| | | || | Sbjct 3804 GCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGC 3745 Query 66319 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 | || | | | | |||| ||| || || || ||| ||| ||||| | |||||| | Sbjct 3744 GGATGTTGTGCATACTGAT--ACCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTG 3687 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGC 66435 |||| || || ||||||||||| || |||||| ||| | ||| || ||||| Sbjct 3686 CTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAACAAG 3628 Query 66436 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 66495 ||||| ||| |||| || |||||||| || | ||||| | |||||||| || Sbjct 3627 AAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA 3568 Query 66496 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 66555 | |||| || | || | |||||| || | || || || || | | || || | Sbjct 3567 ACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGGATGC 3508 Query 66556 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 66615 | | || ||||| | | ||| ||||| || | || |||| |||| || | | Sbjct 3507 CCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTCACGCGGA 3448 Query 66616 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 66675 | | |||| ||| | || || || |||||||||| ||| ||||| || |||| Sbjct 3447 AAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGGTCGT 3388 Query 66676 AAATAATAACCGAGTTGAG 66694 || || |||||||||| Sbjct 3387 GGATGATGGCCGAGTTGAG 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657792211578400