Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq46202 178 2e-39 seq46075 165 1e-35 seq45717 163 4e-35 >seq46202 Length=175750 Score = 178 bits (196), Expect = 2e-39 Identities = 418/623 (67%), Gaps = 15/623 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | ||| || || ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || |||||||| || | |||||| ||||| ||| || || || || ||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGA-GCAGAAAGAGCCCGAGAAGAA 40571 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| ||||||||||| ||||| || | || | ||| || || || | || Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| ||||| | || ||||| | |||||||| || || || || || Sbjct 40632 --GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGC 40688 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | | |||| || || || | || || | || || || || | ||| || Sbjct 40689 ACGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTA 40748 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| |||||||| || ||||| ||||| || ||||| || || | ||| || | Sbjct 40749 AACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGG 40808 Query 50313 AATCTGCACTTCTGTAC--AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| ||| ||| || || || | || || ||||| ||||| || ||| Sbjct 40809 CACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTG 40866 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || || | |||||||| || || || |||||| || || || || Sbjct 40867 GCAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTC 40926 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | | ||| | || || | ||||| || || ||||||||| Sbjct 40927 CAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || |||||||| | ||| | || || | || || ||||| | ||| || | || || Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAAGCGGTTGGGG 41046 Query 50551 TTTGGTGCAAGGATCGGTTCCAT 50573 || |||||| ||| || || Sbjct 41047 TTCTCGACAAGGAACGGCTCGAT 41069 >seq46075 Length=65249 Score = 165 bits (182), Expect = 1e-35 Identities = 406/607 (67%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||| || ||||| || ||||| ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGCCT 31924 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||||||||| ||||| ||||| || | || | |||| | || | || | Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTAC--GACGATA 31982 Query 50131 T-CATGTATC-CACT-TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | || || ||| |||||| ||||| | ||||| || || || || Sbjct 31983 CACGTGGGTCACACCATTTGAGTGT--------TTCTTCTGGACACACGGGATGGTCTCG 32034 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || || ||| | || ||| || ||| || | || || || || | || Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || | |||||| || ||||| || || || ||||| || || || || || | ||| Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGT 50365 || | ||||||||||| ||| || ||||| || | ||| || || || || |||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGT 32212 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 ||||||| || || || || | || || || || || || || ||| ||| |||| Sbjct 32213 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTT 32272 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | ||| || |||| ||| | || ||| | || || | ||||| || || |||| Sbjct 32273 TCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCT 32332 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 ||||||| || ||||| | ||| | || || | ||||| ||||| | || || | | Sbjct 32333 CTGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGT 32392 Query 50546 TTGGATT 50552 | ||||| Sbjct 32393 TGGGATT 32399 >seq45717 Length=39516 Score = 163 bits (180), Expect = 4e-35 Identities = 781/1226 (64%), Gaps = 24/1226 (2%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || ||||| ||||| || ||||| || | ||||| |||| |||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | | || || ||||| || | |||||||| ||||| || ||||| | ||| | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT----CGTCCATC 79595 || | || || |||||||| || | | ||| | | || || ||||| | Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 79596 TATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 79655 || ||| | | |||||| || || | || || || || ||||||| || Sbjct 4342 ----ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGA 4287 Query 79656 CGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTG 79715 | ||| | || | ||| ||| | ||| || | |||||| || || || ||||| Sbjct 4286 TGTATACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTG 4227 Query 79716 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 || ||| ||| || ||||| || || || || || ||||| || ||||| Sbjct 4226 GTTCGACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTG 4167 Query 79776 AGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTT 79833 || || | || || ||| | | || | || || || | || | | || || Sbjct 4166 AGCGTCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT 4108 Query 79834 TCTCTTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 || | ||||| | | ||| | | | |||||||||||| ||||| |||| | | Sbjct 4107 -CTGTCTCGTACTTTTCGTACAGAGT--TTCGAACTCGTCGCCCCAGCACTCGTAGAGGC 4051 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | || ||||| |||||| | | ||||| || | ||| ||| || ||||| | Sbjct 4050 CCGGGGCTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGA 3991 Query 79952 AGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||||| | ||| || || || || || || | || | || ||||| || Sbjct 3990 AGAGATCAGGCACCCAGAGCGCGTAGAACAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCG 3932 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 3931 TGGTTCTTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATG 3872 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | ||| || || ||| ||||| || | || | || |||| ||| | Sbjct 3871 GCGAAGGAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAAC 3812 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | || ||| || ||||| |||||||| | || || || || ||| ||||| | Sbjct 3811 ACACGCAGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTA 3752 Query 80191 CTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 |||| || || || || ||||| || || || || ||| ||| ||||| | | Sbjct 3751 GTGGCGCGGATGTTGTGCATACTGATA--CCGATGCCGCCCGCCCATTTCGAGATACAGG 3694 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGA 80307 ||||| | |||| || || ||||||||||| || ||||| ||| | ||| || Sbjct 3693 CGCATTGCTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGG 3635 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 ||||| ||||| ||| |||| || |||||||| || | ||||| | |||||| Sbjct 3634 AAACAAGAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGC 3575 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || | |||| |||| || | |||||| || | || || || || | | Sbjct 3574 GTGAAGAACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTG 3515 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || || || | || ||||| | | ||| ||||| || | || |||| |||| ||| Sbjct 3514 TGGATGCCCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTC 3455 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | || | ||| ||| | || || || |||||||||| ||| ||||| Sbjct 3454 ACGCGGAAAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCG 3395 Query 80548 CGTTCGTAAATAATAACCGAGTTGAG 80573 || |||| || || |||||||||| Sbjct 3394 CGGTCGTGGATGATGGCCGAGTTGAG 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717853461066400