Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq45717 158 2e-33 seq46202 145 1e-29 seq46075 120 4e-22 >seq45717 Length=39516 Score = 158 bits (174), Expect = 2e-33 Identities = 779/1223 (64%), Gaps = 18/1223 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || ||||| ||||| || ||||| || | ||||| |||| |||||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | | || || ||||| || | |||||||||||||| || ||||| | || | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 || | || || |||||||| || | | ||| | | || || | || Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 || ||| | || || || || | || || || || ||||||| || | | Sbjct 4342 ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTA 4283 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || | ||| ||| | || || | ||||| || || || ||||| || Sbjct 4282 TACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTC 4223 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| ||| || ||||| || || ||||| || ||||| || ||||||| Sbjct 4222 GACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCG 4163 Query 71863 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTC 71920 || | || || ||| | | || | || || || | || | | | || || || Sbjct 4162 TCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT-CTG 4105 Query 71921 TTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAG 71977 | ||||| | | ||| | | | |||||||||||| ||||| ||| | || | || | Sbjct 4104 TCTCGTACTTTTCGTACAGAGT--TTCGAACTCGTCGCCCCA-GCACTCGTAGAGGCCCG 4048 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | ||| || ||||| | | ||||| || | | | ||| || ||||| |||| Sbjct 4047 GGGCTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGA 3988 Query 72038 GATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 ||||||| | ||| || || || || || || | || | || ||||| || Sbjct 3987 GATCAGGCACCCAGAGCGCGTAGAACAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCGTGG 3929 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 ||||| ||||| |||||| | | | || | ||||| || |||||||| ||||| Sbjct 3928 TTCTTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCG 3869 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | ||| || || ||| ||||| || | || | || |||| ||| | || Sbjct 3868 AAGGAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACA 3809 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | || ||| || ||||| |||||||| | || || || || ||| ||||| | || Sbjct 3808 CGCAGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTG 3749 Query 72277 GCACGAATATTGCTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 || || || ||| || ||||| || || || || ||| ||| ||||| | |||| Sbjct 3748 GCGCGGATGTTGTGCATACTGATA--CCGATGCCGCCCGCCCATTTCGAGATACAGGCGC 3691 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAA 72393 || | |||| || || ||||||||||| || |||||| ||| | ||| || ||| Sbjct 3690 ATTGCTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAA 3632 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || ||||| ||| |||| || |||||||| || | ||||| | |||||||| Sbjct 3631 CAAGAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTG 3572 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT 72513 || | |||| |||| || | |||||| || | || || || || | | || Sbjct 3571 AAGAACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGG 3512 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT 72573 || || | || ||||| | | ||| ||||| || | || |||| |||| ||| | Sbjct 3511 ATGCCCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTCACG 3452 Query 72574 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 72633 || | |||| ||| | || || || |||||||||| ||| ||||| || Sbjct 3451 CGGAAAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGG 3392 Query 72634 TCGTAAATAATAACCGAATTGAG 72656 |||| || || |||| ||||| Sbjct 3391 TCGTGGATGATGGCCGAGTTGAG 3369 >seq46202 Length=175750 Score = 145 bits (160), Expect = 1e-29 Identities = 411/623 (66%), Gaps = 15/623 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| ||||| || | ||| || | ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| || |||||||| || | |||||| || || ||| || || || || ||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGA-GCAGAAAGAGCCCGAGAAGAA 40571 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CAC-----TGTC 42237 ||| ||||||||||| ||||| || | || | ||| || || ||| ||| Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| ||||| | || ||||| | |||||||| || || || || || Sbjct 40632 --GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGC 40688 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | | |||| || || || | || || | || || || || | ||| || Sbjct 40689 ACGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTA 40748 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| || ||||| ||||| || ||||| || || | || || | Sbjct 40749 AACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGG 40808 Query 42418 AACCTGTACTTCTGTAC--AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| ||| ||| || || || | || |||||||| ||||| || ||| Sbjct 40809 CACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTG 40866 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || || || || || | |||||||| || || | |||| || | || || Sbjct 40867 GCAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTC 40926 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | | ||| | || || | ||||| || || || |||||| Sbjct 40927 CAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || |||||||| | ||| | || || | ||||| ||||| | ||| || | || || Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAAGCGGTTGGGG 41046 Query 42656 TTTGGTGCAAGGATCGGTTCCAT 42678 || |||||| ||| || || Sbjct 41047 TTCTCGACAAGGAACGGCTCGAT 41069 >seq46075 Length=65249 Score = 120 bits (132), Expect = 4e-22 Identities = 396/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| || ||||| || ||||| |||||| || | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | | || || ||||| || || ||||| || ||||| || | || ||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGCCT 31924 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-ACT 42234 || |||||||||||||| ||||| ||||| || | || | |||| | || || | | Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTA--CGACGATA 31982 Query 42235 GTCATGTATC-CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || || || | ||||| | ||||| | ||||| || || || || Sbjct 31983 CACGTGGGTCACACCATTTGA--------GTGTTTCTTCTGGACACACGGGATGGTCTCG 32034 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || || ||| | || ||| || ||| || | || || || || | || Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || | ||| || || ||||| || || || ||||| || || || || || | || Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | | ||| ||||| ||| || ||||| || | ||| ||||| || || |||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGT 32212 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 ||||||| || || || || | || || || || || | || | ||| | || Sbjct 32213 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTT 32272 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | ||| || |||| ||| | || ||| | || || | ||||| || || || | Sbjct 32273 TCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCT 32332 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 ||||||| || ||||| | ||| | ||| || | || || ||||| | || || | | Sbjct 32333 CTGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGT 32392 Query 42651 TTGGATT 42657 | ||||| Sbjct 32393 TGGGATT 32399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670751113757600