Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq35973 140 3e-28 seq39238 105 7e-18 >seq35973 Length=2546 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||| ||||||| |||| ||| || || || Sbjct 397 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 456 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| |||||||||| ||||| || ||||| |||||||| ||||| ||||||| Sbjct 457 TTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTT 516 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | || ||||| || || || || | || | ||||||||||||| Sbjct 517 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 576 Query 143162 AATGTTTTTACGAATATTTGCATAG 143186 || || || ||||| || ||||||| Sbjct 577 AAAGTCTTCACGAAAATCTGCATAG 601 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || ||||| || || |||||||| ||||||| || | ||| || || || Sbjct 168 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTCCAGCTG 227 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || ||||| |||||||||| || || || ||||| |||||||| || || |||||| Sbjct 228 CTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGAATTTT 287 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| || | | || | || ||||| || || || || | || | |||||||||||| Sbjct 288 TTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGT 347 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 ||| || || || || || ||||| Sbjct 348 CAAAGTCTTCACAAAGATCTGCAT 371 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 ||||||| |||||||||| || || || ||||| |||||||| ||||| |||||||| Sbjct 2 TACCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTT 61 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 | || | | || | || ||| | || || || || | || | |||||||||||||| Sbjct 62 GCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCA 121 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 | || || || || || ||||| Sbjct 122 AAGTCTTCACAAAAATCTGCAT 143 >seq39238 Length=3815 Score = 105 bits (116), Expect = 7e-18 Identities = 134/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||||||| |||| ||| || || || Sbjct 3586 TGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 3645 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTT 143100 |||||||| |||||||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 3646 TTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTAATTTT 3705 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| || | | || | || ||| | || || || || | || | ||||||||| || Sbjct 3706 TTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGT 3765 Query 143161 CAA 143163 || Sbjct 3766 TAA 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506721218923200