Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq44488 109 1e-18 seq35973 105 2e-17 seq46143 93.3 1e-13 seq39983 89.7 1e-12 seq3294 86.0 1e-11 >seq44488 Length=18910 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| ||||| | |||||| Sbjct 18883 AAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTC 18824 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || ||||| || || || || || || Sbjct 18823 CTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 18764 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | | || || ||||| || || || ||||| Sbjct 18763 CTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGT 18704 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||| || || || || || || || ||||||||||||| Sbjct 18703 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTTGT 18666 >seq35973 Length=2546 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || || ||||| || || | ||||| Sbjct 159 AAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTC 218 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | |||||| |||||||| || ||||| ||||| Sbjct 219 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATC 278 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||| || || || || | | || ||| || || || || || || || Sbjct 279 CTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 338 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 339 CTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 >seq46143 Length=82526 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | || || || || || || || Sbjct 41640 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 41581 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || ||||| || ||||| || || ||||| Sbjct 41580 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTG 41521 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | | || || || || || || || || || || || ||||| || Sbjct 41520 -ACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTAAGGGT 41462 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 || || || ||||||||||| ||| Sbjct 41461 CTTGACGAAAATCTGCATTTTCTGT 41437 >seq39983 Length=4479 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || || || || || ||||| ||||| | |||||| Sbjct 247 AGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCC 188 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || ||||| || || || || || ||| Sbjct 187 TCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 128 Query 104468 TGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||| || || || || | | || || || || || || ||||| || Sbjct 127 TGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGT 69 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 68 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq3294 Length=374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCT-GAATATTATAGTCAGATAGAGTTCTACCGT 104405 ||| || || || | || || || |||| | || || ||||| ||||| | ||||| Sbjct 358 AAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGT 299 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | || || || || || ||||| || || | ||| || ||||| || || || || || | Sbjct 298 CCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGT 239 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||||||||| | || || || || | | || || || || || || ||||| | Sbjct 238 CCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGG 179 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 178 TCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150715958972080