Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq44736 104 2e-17 >seq44736 Length=21210 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||| | |||||||||||||||||||||||| ||||| || || || ||||| | Sbjct 13160 TTGAACAAGATCACGCCCACGTTGCCGCGGTAGTCTGCGTCGATGACACCAGCGCCTGTG 13101 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCG 5764 |||||||| | ||| || || || ||||| || |||||||| ||||||| || || Sbjct 13100 TCGATGAACTTCTTCCAGGCAAGACCCGAGCGAGGCGCCACGCGTGCGTAGCAGCCGTCA 13041 Query 5765 GGAAGCTG-TATCTGCAGGTCCGTGAACACCACTCGCCGACCGCCCGCAGGGACGATGCA 5823 |||| ||| || |||||||| || | | | |||||||| |||| || | Sbjct 13040 GGAA-CTGCGATGATAAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCTGGGATGACGGC 12982 Query 5824 GTCGCAAGCGCTGCAGAGGTC 5844 |||| | ||| ||||||| Sbjct 12981 GTCGTACGCGGCCGAGAGGTC 12961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429811938017120