Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq44985 93.3 3e-14 >seq44985 Length=24218 Score = 93.3 bits (102), Expect = 3e-14 Identities = 319/492 (65%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| |||||||| || || | || || ||||| || || || | |||| Sbjct 8416 AGCTGTTTCTGAAGCGGTTCCACATGGTTTAGATACACGTGTGCATCACCGATGACGTGG 8357 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 | |||||| || || | ||| || || || | || | || ||| || || |||| Sbjct 8356 ATAAACTCGCCAGGCTTTAGGCCTGTCACTTGTGCTACCAGTCGCGTAAGAAGCGCGTAG 8297 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || ||||| || | |||||||| || || | ||| || | || || Sbjct 8296 CTGGCGATGTTGAAAGGTACACCAAGTCCCATGTCGGCC-GAGCGCTGATACATTTGGCA 8238 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | || | | | |||||| ||||| || | ||| |||||| || || || || Sbjct 8237 AGACAATTCCCCATTGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGTGCCAT 8178 Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GT 25711 | | ||| || ||||| || | | | || | | ||| || || || Sbjct 8177 CTCGTTGAGATCTGAGGGATTCCACGCCGAGAGCACAATCCGTCGGTCAGTCGGATTCGT 8118 Query 25712 CC----CTGATAAGATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTC 25766 | || | | ||| | | ||| |||| ||||| || | || | |||||| Sbjct 8117 ACGCAGCTTGTGA-ATCACC-----TCAGCAAGCTGGTCCACGCCTTTGCCAGTGTAGTC 8064 Query 25767 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCC 25826 || |||||||||||||| || || || | | |||||| || ||||| || ||||| Sbjct 8063 CGCATGCATGTCCGTGTACTTGGCGCCAAAGTGGCGCCACTGAAAGCCGTAAACAGGTCC 8004 Query 25827 TAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATT 25886 ||||| ||| | |||| |||| || || | |||||| | || | || ||||| Sbjct 8003 AAGGTCACCAACCTCCCGATGCTGAAGTCCTCGACTATCCAGGTACTCGCGAGATCCATT 7944 Query 25887 GGCGTCCCAGAT 25898 |||||||||| Sbjct 7943 ACCGTCCCAGAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339945832546980