Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq46143 100 2e-16 seq35973 95.1 1e-14 seq43815 82.4 6e-11 >seq46143 Length=82526 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | ||||| | || || || |||||| || |||||||| || | Sbjct 41671 ACCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 41612 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | ||||| |||||||| ||| || | || | ||||||||| || || Sbjct 41611 CAGAGTGCGGC-CATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCG 41553 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||||||||||||| | | ||| | || | | |||| Sbjct 41552 GGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCA 41493 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| || || || || || || ||||||||||| Sbjct 41492 CGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq35973 Length=2546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || | || || ||||||||||||| Sbjct 397 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGGCCGTCCTCCAGCTG 455 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || | ||||||||| || || | | |||||||||| |||||| Sbjct 456 CTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTT 515 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||||| | | || || | || | || |||| || | || || || || ||| Sbjct 516 TTGCTTGACGTTGTCG--ATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCG 573 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGT 48729 || | ||| ||||| ||||||||||| || Sbjct 574 GTCAAAGTCTTCACGAAAATCTGCATAGT 602 >seq43815 Length=14243 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| || || | | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | ||||||||| |||||||||||||| | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT 5128 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || | || ||||||| Sbjct 5127 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5068 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 5067 AGATCTGCAT 5058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421013701206260