Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq35973 113 4e-20 seq39238 111 1e-19 seq46143 104 2e-17 seq3294 102 7e-17 seq39983 98.7 9e-16 seq44488 91.5 1e-13 >seq35973 Length=2546 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | ||| || ||||||| ||| | ||||| Sbjct 390 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 449 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | ||||| || ||||| || ||||| ||||| | Sbjct 450 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 509 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||| ||||||| | ||| | ||| | | || ||||| | |||||| || || Sbjct 510 AATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTT 569 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| ||||| || |||||||| Sbjct 570 GCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | || |||||||| || | ||| || ||||||| || | ||||| Sbjct 162 CACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTC 221 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | || || || ||||| || ||||| || || | Sbjct 222 CAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTG 281 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||| ||||||| | ||| | ||| | | || ||||| | |||||| || || Sbjct 282 AATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTT 341 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | ||| ||||||||||||||||||| Sbjct 342 GCCGGTCAAAGTCTTCACAAAGATCTGCATGC 373 >seq39238 Length=3815 Score = 111 bits (122), Expect = 1e-19 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || ||||||| ||| | ||||| Sbjct 3579 CACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 3638 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT- 94916 |||||| || || | ||||| | | ||||| || ||||| || ||||| ||||| | Sbjct 3639 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 3698 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||||| ||||||| | ||| | ||| | | || ||||| | |||||| || | Sbjct 3699 TAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCT 3758 Query 94977 TTCCAG-TAAGAGTTTTCAC-AAAGATCTGCATGC 95009 | |||| ||| ||| ||||| |||||||||||||| Sbjct 3759 TGCCAGTTAAAAGTCTTCACAAAAGATCTGCATGC 3793 >seq46143 Length=82526 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||| ||||| || || ||||| || | ||| || || || |||| | | Sbjct 41658 CGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA 41599 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || || || ||||| ||| Sbjct 41598 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 41539 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 41538 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATG 41479 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| || || || || |||||||| Sbjct 41478 GTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq3294 Length=374 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTT-TTGCACGTTATAATCGCTCATAGTGTTGGAATCCT 94856 ||||| ||| | ||| || ||||| ||| | ||| || ||||||| ||| |||| Sbjct 355 CACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCT 296 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| ||||||| | | ||||| || || || || || || ||||| | Sbjct 295 CAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCT 236 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||| ||| | ||| | ||| | | || ||||||| || ||||| | Sbjct 235 GAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCT 176 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || ||||| ||||||||||||| Sbjct 175 TGCCCGTCAGCGTCTTCACGAAGATCTGCATGC 143 >seq39983 Length=4479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || || |||||||| | ||| || ||||||| ||| Sbjct 250 CGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCG 191 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 190 TCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 131 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | || ||||||| || ||| Sbjct 130 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATG 71 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||| ||||||||||||| Sbjct 70 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGC 34 >seq44488 Length=18910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| || ||||| || | ||| || ||||||| ||| ||||| Sbjct 18880 CACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTC 18821 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| ||||||| | | ||||| || || || || || || ||||| | Sbjct 18820 AAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 18761 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| || | ||| | ||| | | || || || | |||||| || || Sbjct 18760 AATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTT 18701 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 18700 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448031975613600