Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq46109 168 1e-37 seq45257 152 8e-33 seq46111 136 6e-28 >seq46109 Length=73585 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 30352 CGCTAAGCGTCACCGCAAGGTTCTTCGTGACAACATCCAGGGCATCACCAAGCCCGCTAT 30411 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 30412 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 30471 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| ||| | || ||| || || Sbjct 30472 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTCACCTACACTGA 30531 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || |||||||| |||| || || | || || || || Sbjct 30532 GCACGCTCGCCGTAAAACCGTGACTGCCATGGATGTCGTGTACGCTCTTAAGCGCCAGGG 30591 Query 16672 CCG 16674 ||| Sbjct 30592 CCG 30594 >seq45257 Length=28383 Score = 152 bits (168), Expect = 8e-33 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | |||||| || |||||||| || || |||||||| |||||| Sbjct 27423 GCCAAGCGTCACCGCAAAGTTCTTCGCGACAACATCCAGGGTATTACCAAGCCCGCTATC 27482 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| ||||||| | |||| || |||| Sbjct 27483 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGACC 27542 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || | || ||| || ||| Sbjct 27543 CGTGGCGTCCTGAAGGTGTTCCTTGAGAACGTCATCCGCGACTCGGTCACCTACACTGAG 27602 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || || || ||||||| | || || || | || ||||| ||| Sbjct 27603 CACGCTCGTCGCAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 27662 Query 16673 CG 16674 || Sbjct 27663 CG 27664 >seq46111 Length=73616 Score = 136 bits (150), Expect = 6e-28 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | |||||| || ||||||||||| |||||||| || || || Sbjct 26573 CGCTAAGCGTCATCGTAAGGTTCTTCGTGACAACATCCAAGGTATCACCAAACCGGCAAT 26514 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| ||||| || ||||||||| |||| || | |||| || |||| Sbjct 26513 CCGTCGTCTTGCTCGCCGTGGCGGTGTCAAGCGTATCTCCGGCCTTATCTACGAGGAGAC 26454 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||||| || | |||||| | | ||| |||| || | || || || || Sbjct 26453 TCGCGGTGTTTTAAAAGTATTCCTCGAAAACGTCATCCGCGACTCGGTCACGTACACAGA 26394 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||| || ||||| || || ||||||| Sbjct 26393 ACACGCACGTCGCAAGACCGTGACGGCCATGGA 26361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79032904158180