Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq46202 163 4e-35 seq46075 152 6e-32 seq45717 114 2e-20 >seq46202 Length=175750 Score = 163 bits (180), Expect = 4e-35 Identities = 393/589 (67%), Gaps = 13/589 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| |||||||| | ||| || || ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || | |||||| ||||| ||| || || || |||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAAG 40572 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-----TCCATAACCGGCG-CTGTCA 33477 || ||||||||||||||||| || | || | ||| | | || || ||| Sbjct 40573 ATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC- 40631 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| ||||| | || ||||| | |||||||| || || || || ||| Sbjct 40632 -GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCA 40689 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | |||| || || || | || || | || || || || | ||| || Sbjct 40690 CGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTAA 40749 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| |||||||| || ||||| ||||| || ||||| || || | ||| || | Sbjct 40750 ACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGC 40809 Query 33658 ATCTGTACTTCTGTAC--AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| ||| ||| || || |||| || || ||||| ||||| || |||| Sbjct 40810 ACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTGG 40867 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 | || || || || | |||||||| || || | |||| || || || ||| Sbjct 40868 CAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTCC 40927 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || |||| || | | ||| | || || | ||||| || || |||||||||| Sbjct 40928 AGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCT 40987 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | |||||||| | ||| | || | | || || ||||| | ||| || Sbjct 40988 TCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAA 41036 >seq46075 Length=65249 Score = 152 bits (168), Expect = 6e-32 Identities = 401/606 (66%), Gaps = 17/606 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||||| || ||||| || ||||| ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || | Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTG 31925 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-G 33474 | |||||||||||||| ||||||||||| || | || | |||| | || || || | Sbjct 31926 AGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTA--CGACGATAC 31983 Query 33475 TCATGTATC-CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | || || || | ||||| | ||||| | ||||| || || || || | Sbjct 31984 ACGTGGGTCACACCATTTGA--------GTGTTTCTTCTGGACACACGGGATGGTCTCGA 32035 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | || || ||| | || ||| || ||| || | || || || || | || Sbjct 32036 TAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGCG 32095 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 || | |||||| || ||||| || || || ||||| || || || || || | ||| | Sbjct 32096 AGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCTT 32155 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | ||||| ||||| ||| || |||| |||| ||| || || || || ||||| Sbjct 32156 CAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGTC 32213 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || || || || | || || || || || | || | ||| ||||| Sbjct 32214 ACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTTT 32273 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||| || |||| ||| | || ||| | || || | ||||| || || ||||| Sbjct 32274 CGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCTC 32333 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 |||||| || ||||| | ||| | || | | ||||| ||||| | || || | || Sbjct 32334 TGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGTT 32393 Query 33891 TGGATT 33896 ||||| Sbjct 32394 GGGATT 32399 >seq45717 Length=39516 Score = 114 bits (126), Expect = 2e-20 Identities = 765/1220 (63%), Gaps = 12/1220 (1%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || ||||| |||||||| ||||| || | ||||| |||| | |||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 || | | || || ||||| || | |||||||| ||||| || ||||| | ||| | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62876 || | ||| || |||||||| || | || ||| | | || || | || Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 || ||| | | || || || || | || || || || ||||||| || | | Sbjct 4342 ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTA 4283 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | || | || ||| | || || | || || || || || ||||| || Sbjct 4282 TACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTC 4223 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| ||| || ||||| || || || || || ||||| || ||||||| Sbjct 4222 GACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCG 4163 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63114 || | || || ||| | | || | || || || | | | | ||||| || Sbjct 4162 TCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT-CTG 4105 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 | ||||| | |||| |||||||||||| ||||| | || | || || Sbjct 4104 TCTCGTACTTTTCGTACAGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGG 4045 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | ||||| | | ||||| |||| ||| || || ||||| ||||||| Sbjct 4044 CTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGAT 3985 Query 63235 CAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 |||| | ||| || || || || || || | || | || ||||| || ||| Sbjct 3984 CAGGCACCCAGAGCGCGTAGAACAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTC 3926 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || ||||| |||||| | | | || | ||||| || |||||||| ||||| | Sbjct 3925 TTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAG 3866 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 || || || ||| ||||| || | || | || |||| ||| | || | | Sbjct 3865 GAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGC 3806 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||| || ||||| || || || || || || || ||| ||||| | |||| Sbjct 3805 AGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCG 3746 Query 63474 CGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 || || | | | | |||| ||| || || || ||| ||| ||||| | |||||| Sbjct 3745 CGGATGTTGTGCATACTGAT--ACCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATT 3688 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAG 63590 | |||| ||||| ||||| ||||| || ||||| ||| | ||| || ||||| Sbjct 3687 GCTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAACAA 3629 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| ||| |||| || |||||||| || | ||||| | |||||||| || Sbjct 3628 GAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAG 3569 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | |||| || | || | |||||| || | || || || || | | || || Sbjct 3568 AACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGGATG 3509 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || | || ||||| | | ||| ||||| || | || |||| |||| || | Sbjct 3508 CCCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTCACGCGG 3449 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 || | |||| ||| | || || || |||||||||| ||| ||||| || ||| Sbjct 3448 AAAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGGTCG 3389 Query 63831 TAAATAATAACCGAGTTGAG 63850 | || || |||||||||| Sbjct 3388 TGGATGATGGCCGAGTTGAG 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622586980781600