Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq45717 291 2e-73 seq44985 100 7e-16 >seq45717 Length=39516 Score = 291 bits (322), Expect = 2e-73 Identities = 640/948 (68%), Gaps = 22/948 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | |||||| || || | ||| ||| |||||||| Sbjct 3570 TTCACGCACGCCACCCCTACTCTCTTCAATGCGGGCACGCCACGTCCCCAGCTGTCTTCT 3629 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||| |||| || || |||||||| |||| ||||| || ||| | Sbjct 3630 TGTTTCCTCTTGGCTATGCAGGATGACTCGATCGAGGGCATCTACGACACTCTAAAGCAA 3689 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 3690 TGCGCCTGTATCTCGAAATGGGCGGGCGGCATCGGTATCAGTATGCACAACATCCGCGCC 3749 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || ||||| | | |||||||| ||| Sbjct 3750 ACTAACAGCTACATCCGTGGCACGAACGGCTCGTCCAATGGCATTATCCCCATGCTGCGT 3809 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || ||| | || || |||||||| ||||| |||||||| || | || Sbjct 3810 GTGTTTAACGACACAGCGCGCTATGTGGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTTC 3869 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAA 363905 || || || | |||||| || ||||| | |||||||| || || || || || || Sbjct 3870 GCCATCTACTTGGAGCCTTGGCACGCCGACGTGTTTGAGTTCCTGGATCTGCGTAAGAAC 3929 Query 363906 CACGGGAAAAGAGGAATT---GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| | | ||| | || || || || ||||||| || || ||||| |||| Sbjct 3930 CACGGCA----ACGAACTCCACCGCGCCCGCGACTTGTTCTACGCGCTCTGGGTGCCTGA 3985 Query 363963 CCATTTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 | || ||||||||||| ||||| || ||| ||| ||||| || || |||| Sbjct 3986 TCTCTTCATGAAGCGCGTAGAGGCCAACGGCAAG---TGGAGTCTCTTCTGTCCTAACGA 4042 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 | || || || | ||| ||||| ||||| | | |||| ||||||||||| || Sbjct 4043 AGCCCCGGGCCTCTACGAGTGCTGGGGCGACGAGTTCGAAACTCTGTACGAAAAGTACGA 4102 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 | || ||| || |||||||| || ||| ||| |||| ||||| |||||| |||| Sbjct 4103 GACAGAAGGACGTGCGCGTAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCTTGGA 4162 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | ||||| ||||| || ||| | |||| ||||||| || | |||||||||||| Sbjct 4163 CGCTCAGATCGAGACTGGCGTACCTTTTATGCTGTACAAGGACGCAGCCAACCGCAAGTC 4222 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||||| ||| || | || || |||| |||||| |||| ||| | || || || Sbjct 4223 GAACCAACAGAACTTGGGGACCATTCGCTCCAGCAACTTATGCTGCGAAGTGATGGAGTA 4282 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 || | || || ||| || || || ||| | ||||| ||||||| || ||| || Sbjct 4283 TACATCGCCTGATGAGGTGGCGGTGTGCAACTTAGCGTCCGTCGCGCTCCCTAAGTTCGT 4342 Query 364320 AAAAGATGGTACTTTTGACCACCAGCATCTT-TATGACGTAACCTA--TCATGCTACTTG 364376 | || | || ||| ||| ||| || || || || | | | || ||| | Sbjct 4343 GGAGGACGCCGTGTTCGACTACC-GCAAGTTGTACGAAGTGGTCAAGGTGAT--TACGCG 4399 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTA 364435 ||| ||| ||||||| || ||| || |||||||| | | || || || | || | Sbjct 4400 CAACCTCAACAAGGTCATAGACGTCAACTATTATCCCGTAGCAGAGGCTCGCAAG-TCCA 4458 Query 364436 ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACG 364483 | ||||| ||||| || ||||| |||| || || || || ||||||| Sbjct 4459 ACATGCGGCATCGTCCTATTGGCATTGGCGTTCAAGGTCTGGCTGACG 4506 >seq44985 Length=24218 Score = 100 bits (110), Expect = 7e-16 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCA 111731 |||||||| || || || || | | |||||||| || || | | ||| | || Sbjct 8178 ATGGCACTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCAATGGGGAATTGTCT 8237 Query 111732 TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGT 111791 ||||||||||||||||| || || || || || |||||||| || || || || || || Sbjct 8238 TGCCAAATGTATCAGCGCTCGGCCGACATGGGACTTGGTGTACCTTTCAACATCGCCAGC 8297 Query 111792 TACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATT 111851 ||||| || ||||| | | | || || | ||| || || || || || || || Sbjct 8298 TACGCGCTTCTTACGCGACTGGTAGCACAAGTGACAGGCCTAAAGCCTGGCGAGTTTATC 8357 Query 111852 CACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTG 111911 ||||| ||||| ||||| || || || |||||| | || | ||| | | |||| | Sbjct 8358 CACGTCATCGGTGATGCACACGTGTATCTAAACCATGTGGAACCGCTTCAGAAACAGCTT 8417 Query 111912 AAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 | ||| | ||| | | ||||| || |||| ||||| Sbjct 8418 ACGCGTACACCGTGCCCGTTCCCGACACTTCACATCAA 8455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302581094175320