Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq46143 152 5e-32 seq35973 141 9e-29 seq39983 132 5e-26 seq39238 122 8e-23 seq45717 116 3e-21 seq3294 114 1e-20 seq43815 104 2e-17 seq44488 102 8e-17 >seq46143 Length=82526 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| ||| | || | |||||||||||| || |||||||| || | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||||| | || | | || | | ||| | | Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 41491 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| || || || || || |||||||||||||| Sbjct 41490 TCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq35973 Length=2546 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | || |||||||| || |||||||| ||||| Sbjct 372 GCCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 431 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 432 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 491 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||| ||||||| | || | | || | | ||| | Sbjct 492 GATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 551 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || ||||| | ||| || |||||||||||||| Sbjct 552 GTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | ||| | || || ||||| || |||||||| ||||| Sbjct 144 GCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCT 203 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| ||| |||| | |||||| ||||| ||||| Sbjct 204 CAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGG 263 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||||| ||||||| | || | | || | | ||| | Sbjct 264 GATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 323 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || ||||| | ||| || || || ||||||||| Sbjct 324 GTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 >seq39983 Length=4479 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||| || | || | |||||||||||||| |||||||| |||||| Sbjct 262 CCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 203 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 202 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 143 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||| | | || | | || | | ||| | | Sbjct 142 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 83 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || || || || ||||| ||||||||| Sbjct 82 TCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq39238 Length=3815 Score = 122 bits (134), Expect = 8e-23 Identities = 119/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || ||||| | || | || |||||||| || |||||||| |||||| Sbjct 3562 CCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3621 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 3622 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 3681 Query 131128 ATTCCTTCTTTGT-CGGTGATTTTCTGCTTGA 131158 || ||||| |||| | || ||||| ||||||| Sbjct 3682 ATGCCTTCCTTGTCCTGTAATTTTTTGCTTGA 3713 >seq45717 Length=39516 Score = 116 bits (128), Expect = 3e-21 Identities = 704/1108 (64%), Gaps = 52/1108 (5%) Strand=Plus/Minus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 |||||||| |||| ||| ||||| |||| ||| |||||| | || || | ||||||| Sbjct 4879 AACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCG 4820 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || |||||||||||||| || || | || ||||||||| || |||| | || ||| Sbjct 4819 TTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATGGGGGCAACCAGCAGCGAGTTG 4760 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGC---GAAGTC 145246 || || || || || | | ||| || || || | |||||| ||| ||| || Sbjct 4759 CGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCCCAATTCCAAAGCCCAGATTGA 4700 Query 145247 GGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAG 145306 || | || ||||||| ||| |||| || || |||| |||||| || ||| || || Sbjct 4699 GGTGTGACACCCCACATATCGAACTGGAAGATCCCCTTGCTGGCTGGCGAGCCCTGGAAC 4640 Query 145307 GAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATA 145365 | |||| | ||||| | ||| | ||| || ||||| || | || || Sbjct 4639 GTCTCGTAA-GGTCCCAACTCCACGGCAATCTCCATGGACGTCTCCATGGCAGCAAAGTA 4581 Query 145366 AATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCG 145425 || |||||| || | | |||| | |||| ||||||| |||| | Sbjct 4580 GATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAGTT 4521 Query 145426 CAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCAT 145485 || || | || || || || || || || | || | ||| || || ||||| ||| Sbjct 4520 CATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGCAT 4461 Query 145486 GTTGCTCATCCTCGCCGACTCGATAGGAT-ATCGATTACGGTCGATAATTTTATTCAAGT 145544 |||| | | | ||| | | |||| || | | || ||| || | || || | || Sbjct 4460 GTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGAC-GTCTATGACCTTGTTGAGGT 4402 Query 145545 TTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAA 145604 | ||| | ||||| | | |||||| |||| ||| || || || | Sbjct 4401 TGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCCA 4342 Query 145605 CGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGT 145664 ||| | || || |||| ||||| || || || || ||| ||| || | Sbjct 4341 CGA------ACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATC--AGG 4290 Query 145665 CGCTGTATTGTACGATC---TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTT 145721 || ||||| | | ||| ||| ||| || ||||| | ||||| |||| || | Sbjct 4289 CGATGTATACT-CCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCT 4231 Query 145722 GCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCA 145781 | || || || | |||| ||||||||||| ||||| | ||| |||||||||| | Sbjct 4230 GTTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGA 4171 Query 145782 CCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTA-GC 145838 ||| | |||| ||| ||| || | |||||| || || | || || Sbjct 4170 TCTGAGCGTCCAAGATGGCGAAC--CACAGCTGCTGCGC-----GTTGATGGTCTTACGC 4118 Query 145839 GGCCCT-CTTCT---TCGTA--TTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAAT 145892 | | | ||||| ||||| |||| | |||| | || ||| || || |||| | Sbjct 4117 GCACGTCCTTCTGTCTCGTACTTTTCGTACAGAGTT--TCGAACTCGTCGCCCCAGCACT 4060 Query 145893 CGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGC 145952 || | ||||| || | ||| ||||| | || ||| ||||||||| | |||| Sbjct 4059 CGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGC 4000 Query 145953 GCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCAATC 146010 ||| ||| || | ||| |||||||| |||||||| | |||||||| |||| || | | Sbjct 3999 GCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCGCGGGCGCGGTGGAGTT 3940 Query 146011 CTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066 | | || || || ||| || || || | ||| | | | ||| |||||||| | Sbjct 3939 C---GTTGCCGTGGTT--CTTACGCAGATCCAGGA-ACTCAAACACGTCGGCGTGCCAAG 3886 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTA 146123 | || | |||| ||||| || || || || || || ||||||||||| | || Sbjct 3885 GCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCG 3826 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGG 146151 | ||| |||||| || |||| |||||| Sbjct 3825 CTGTGTCGTTAAACACACGCAGCATGGG 3798 >seq3294 Length=374 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTT-TTGAATGTTGTAATCGC 131065 |||||| |||| || ||||| | || | ||||||||||| ||| |||||||| |||| Sbjct 373 GCCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGC 314 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 ||| || || |||||| ||||||||||| || |||| | ||||||||||| || | Sbjct 313 TCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCG 254 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| || || ||| | | || | | || | | ||| | Sbjct 253 GGATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCA 194 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | ||||| ||| || || || || || || ||||| ||||||||| Sbjct 193 CGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | ||||||||||| || |||||||| ||||| Sbjct 144 GCCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 85 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 84 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 25 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 24 GATGCCCTCCTTGTC 10 >seq43815 Length=14243 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || |||||||| || ||||| ||||||||||||| | | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT 5128 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || | || || || | Sbjct 5127 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5068 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 5067 AGATCTGCATGA 5056 >seq44488 Length=18910 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| |||||| Sbjct 18897 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 18838 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 18837 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 18778 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 18777 ATGCCCTCCTTGTC 18764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471739858598400