Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq41183 122 6e-23 seq23500 122 6e-23 seq904 116 2e-21 seq45469 113 3e-20 seq26846 113 3e-20 seq7881 113 3e-20 seq6196 105 4e-18 seq45402 104 2e-17 seq238 100 2e-16 seq45944 93.3 3e-14 seq46143 91.5 1e-13 seq8548 91.5 1e-13 >seq41183 Length=6076 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 276 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 217 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 216 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 182 >seq23500 Length=1064 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 240 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 181 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 180 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 146 >seq904 Length=254 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 68 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 127 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 |||||| |||||||||||||||| |||||| ||| Sbjct 128 TAATCCATTCATGCGCGTCACTAGTTAGATNACG 161 >seq45469 Length=32483 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||| ||||||||||| | |||||| | Sbjct 18844 AAGCCCGTTCCCTTGGCTGTGGGCTCGCTAGACAGTAGATAGGGACAGTTGGAATCTCAT 18903 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 18904 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 18938 >seq26846 Length=1296 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 249 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 190 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 189 ACCAATATTTAGCTTTA 173 >seq7881 Length=504 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 124 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 65 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 64 ACCAATATTTAGCTTTA 48 >seq6196 Length=471 Score = 105 bits (116), Expect = 4e-18 Identities = 73/83 (88%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 84 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 25 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| |||||||||||||||| Sbjct 24 TAATCCATTCATGCGCGTCACTA 2 >seq45402 Length=31084 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 11684 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTGGTTCGCTATCGATCTCGC 11625 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 11624 ACCAATATTTAGCTTTA 11608 >seq238 Length=214 Score = 100 bits (110), Expect = 2e-16 Identities = 70/77 (91%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 42 CTCTCT-TTCAAAGTTCTTT-CATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 99 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 100 ACCAATATTTAGCTTTA 116 >seq45944 Length=51434 Score = 93.3 bits (102), Expect = 3e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 15704 CTCTCTTTTCAAAGTTACTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 15763 Query 20007 GGTAATATT 20015 |||||| Sbjct 15764 ACCAATATT 15772 >seq46143 Length=82526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||||||||| || || || |||||| || || ||||| || || Sbjct 41671 ACCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 41612 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | || || ||||| || || || || || || || | || Sbjct 41611 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 41552 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 || |||||| |||||| ||||| ||||| ||||| | | | || | || || | Sbjct 41551 GATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTC-CGACGGCTCCA 41493 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || ||||| ||||| | ||| || ||||| |||||||| || Sbjct 41492 CGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq8548 Length=517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 19959 AGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAG 20018 ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 504 AGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCACCAATATTTAG 445 Query 20019 CCTTA 20023 | ||| Sbjct 444 CTTTA 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334758358862060