Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq46202 154 2e-32 seq46075 147 3e-30 seq45717 132 6e-26 >seq46202 Length=175750 Score = 154 bits (170), Expect = 2e-32 Identities = 407/613 (66%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | |||||||| | ||| || | ||||| || || |||| Sbjct 40453 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGA 40512 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| || |||||||| || | |||||| ||||| ||| || || || || ||||| Sbjct 40513 CCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGA-GCAGAAAGAGCCCGAGAAGAA 40571 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || ||||||||||| ||||| || | || | ||| || || || | || Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| ||||| | || ||||| | |||||||| || ||||| || || Sbjct 40632 --GCA-CCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGC 40688 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | |||| || || || | || || | || || ||||| | ||| || Sbjct 40689 ACGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTA 40748 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| || ||||| || || || ||||| ||||| | ||| || | Sbjct 40749 AACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGG 40808 Query 33014 AATCTGTACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| ||| ||| || || || | || || ||||| ||||| || ||| Sbjct 40809 CACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTG 40866 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 || || || || || | |||||||| || || | |||| || || || || Sbjct 40867 GCAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTC 40926 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || |||| || | | ||| | || || | ||||| || || ||||||||| Sbjct 40927 CAGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || |||||||| | ||| | || || | ||||| || || | ||| || | || || Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAAGCGGTTGGGG 41046 Query 33252 TTTTTTGCAAGGA 33264 || | |||||| Sbjct 41047 TTCTCGACAAGGA 41059 >seq46075 Length=65249 Score = 147 bits (162), Expect = 3e-30 Identities = 375/562 (67%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| || ||||| || ||| | ||||||||| | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | | || || ||||| || || ||||| || ||||| || | ||| ||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGCCT 31924 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| |||||||| ||||| ||||| || | || | |||| | || || || | Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTA--CGACGATA 31982 Query 32832 T-CATGTATC-CACT-TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || || ||| |||||| ||||| | ||||| || || ||||| Sbjct 31983 CACGTGGGTCACACCATTTGAGTGT--------TTCTTCTGGACACACGGGATGGTCTCG 32034 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 ||||| || ||| | || ||| || ||| || | || || ||||| | || Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || | |||||| || ||||| || || || || || || || || ||||| | ||| Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGT 33066 || | ||||| ||||| ||| || |||| || | ||| || || || || |||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAA--GTTCATGGCCAGATTCTCGTTGACGATACCGT 32212 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 ||||||| || || || || | || || || || || | || | ||| |||| Sbjct 32213 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTT 32272 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | ||| || |||| ||| | || ||||| || || | ||||| || || |||| Sbjct 32273 TCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCT 32332 Query 33187 CTGCCTTTTTATACATATTCCA 33208 ||||||| || ||||| | ||| Sbjct 32333 CTGCCTTCTTGTACATCTGCCA 32354 >seq45717 Length=39516 Score = 132 bits (146), Expect = 6e-26 Identities = 769/1220 (63%), Gaps = 12/1220 (1%) Strand=Plus/Minus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || ||||| |||||||| ||||| || | ||||| |||| | |||| || || || || Sbjct 4582 TAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGTAG 4523 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 || | | || || ||||| || | |||||||| ||||| || ||||| | ||| | | Sbjct 4522 TTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGC 4463 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | ||| |||| | |||||||| || | ||||| | || ||||| Sbjct 4462 ATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGG 4403 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62731 || | ||| || |||||||| || | || ||| | | || || | || Sbjct 4402 TTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGAACACGGCGTCCTCC 4343 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 || ||| | | || || || || | || || || || ||||||| || | | Sbjct 4342 ACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTA 4283 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || | || ||| | || || | ||||| || || || ||||| || Sbjct 4282 TACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTC 4223 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| ||| || ||||| || || || || || ||||| || ||||||| Sbjct 4222 GACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCG 4163 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 62969 || | || || ||| | | || | || || || | | | | || || || Sbjct 4162 TCCAAGATGGCGAACCACAGCTGCT-GCGCGTTGATGGTCTTACGCGCACGTCCTT-CTG 4105 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 | ||||| | |||| |||||||||||| ||||| | || || || || Sbjct 4104 TCTCGTACTTTTCGTACAGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGG 4045 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| | ||||| | | ||||| |||| ||| || || ||||| ||||||| Sbjct 4044 CTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGAT 3985 Query 63090 CAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 |||| | ||| || || || || || || | || | || ||||| || ||| Sbjct 3984 CAGGCACCCAGAGCGCGTAGAACAAG-TCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTC 3926 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 || ||||| |||||| | | | || | ||||| || |||||||| ||||| | Sbjct 3925 TTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAG 3866 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 || || || ||| ||||| || | || | || |||| ||| | || | | Sbjct 3865 GAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGC 3806 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||| || ||||| |||||||| | || || || || ||| ||||| | |||| Sbjct 3805 AGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCG 3746 Query 63329 CGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 || || || || ||||| || || || || ||| ||| ||||| | |||||| Sbjct 3745 CGGATGTTGTGCATACTGATA--CCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATT 3688 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAG 63445 | |||| || || ||||||||||| || |||||| ||| | ||| || ||||| Sbjct 3687 GCTTTAGAGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATAGCCAAG-AGGAAACAA 3629 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| ||| |||| || |||||||| || | ||||| | ||||| || || Sbjct 3628 GAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAG 3569 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | |||| || | || | |||||| || | || || || || | | || || Sbjct 3568 AACTTTTGCGACATGAGTTCGTACGTTTCGAGTGCGGACGTGATGTCGCTCTTGTGGATG 3509 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || | || ||||| | | ||| ||||| || | || |||| |||| || | Sbjct 3508 CCCAGGGCCACACGTAGGATCATTTGCTGCGGACGCTCCACGACCTTGCCATTCACGCGG 3449 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || | |||| ||| | || || || |||||||||| ||| ||||| || ||| Sbjct 3448 AAAAGGTAGCCGCGTTCGAGCGTCTTGAAGCCAAAATAGTCGTACTCGAAGTCGCGGTCG 3389 Query 63686 TAAATAATAACCGAGTTGAG 63705 | || || |||||||||| Sbjct 3388 TGGATGATGGCCGAGTTGAG 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633265602296000