Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq35973 122 8e-23 seq39983 105 6e-18 seq44488 100 2e-16 seq3294 96.9 3e-15 seq39238 93.3 4e-14 >seq35973 Length=2546 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| | || |||||| | || Sbjct 371 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 312 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| | ||||||||||| || || ||||| || || ||||||||| Sbjct 311 GACTCGATCGACAACGTCAAGCAAAAAATTCAGGATAAGGAAGGCATCCCTCCTGACCAA 252 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | || || || |||| ||||| Sbjct 251 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACGCTGAGCGACTACAAC 192 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| ||| | ||||| Sbjct 191 ATCCAGAAGGAATCAACGCTTCATCTGGTGCT 160 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || |||||||||||||| || | ||||| | || |||||| | Sbjct 603 AACTATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCC 544 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||| | ||||| | ||||||||||| ||||| ||||| || || ||||| Sbjct 543 TTCGGACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGA 484 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || || || | || || | ||||| || |||| || Sbjct 483 CCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 424 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || ||||| || | ||||| Sbjct 423 CAACATCCAGAAGGAGTCTACGCTTCACCTGGTGCT 388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| | || |||||| | || Sbjct 143 ATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCA 84 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| | ||||||||||| ||||| ||||| || || ||||||||| Sbjct 83 GACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 24 Query 25119 CAGCG 25123 ||||| Sbjct 23 CAGCG 19 >seq39983 Length=4479 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || |||| || | || |||||| |||| Sbjct 36 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 95 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||| || || ||||| || || || || |||||||| Sbjct 96 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 155 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||| ||| || |||| ||||| Sbjct 156 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAAC 215 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || || || || Sbjct 216 ATCCAAAAGGAGTCGACACTCCA 238 >seq44488 Length=18910 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || | ||||| |||| || ||| |||| Sbjct 18670 AATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAGCCGTC 18729 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | ||||| ||||| | || | ||| ||||| || || || || ||||||| Sbjct 18730 GGACTCGATCGACAATGTGAAGTCTAAGATTCAG-GACAAGGAGGGCATCCCGCCTGACC 18788 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | || || | ||| ||| || |||| |||| Sbjct 18789 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACA 18848 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || || | ||||| Sbjct 18849 ACATCCAGAAGGAGTCGACTCTTCACCTGGTGCT 18882 >seq3294 Length=374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || |||| || | || |||||| |||| Sbjct 145 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 204 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | ||||| ||||| | || | ||| ||||| || || || || |||||||| Sbjct 205 GACTCGATCGACAACGTGAAGTCTAAGATTCAG-GACAAGGAGGGCATCCCGCCTGACCA 263 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | ||| ||| || |||| ||||| Sbjct 264 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAA 323 Query 25178 TATTCAA-AAAGAATCCACGCTACATTTAGTGCT 25210 || ||| || || || || || || | ||||| Sbjct 324 CATCCAAGAAGGAGTCGACTCTTCACCTGGTGCT 357 >seq39238 Length=3815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTT-GTAAAGACTTTGACC-GGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||| || ||| || |||||||| | | || || | ||||| | || |||||| | | Sbjct 3791 ATGCAGATCTTTTGTGAAGACTTTTAACTGGCAAGACGATCACGCTGGACGTGGAGCCTT 3732 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCAC-TGACAAAGAAGGGATTCCACCTGAC 25115 | ||| | ||||| | ||||||||||| || ||||| ||||| || || |||||| Sbjct 3731 CAGACTCGATCGACAACGTCAAGCAAAAAATTACAGGACAAGGAAGGCATCCCTCCTGAC 3672 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | || || | ||||| || |||| ||| Sbjct 3671 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 3612 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || ||||| || | ||||| Sbjct 3611 AACATCCAGAAGGAGTCAACGCTTCACCTGGTGCT 3577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433083692381900