Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq46075 125 8e-24 >seq46075 Length=65249 Score = 125 bits (138), Expect = 8e-24 Identities = 369/565 (65%), Gaps = 18/565 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| | |||||| ||||| || || | ||| ||||| || |||| || || Sbjct 31804 GTACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGA 31863 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| ||| || || | |||||||| ||||||||||| || | || ||| ||| | | Sbjct 31864 GAAGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGA-GCAGAACGAGC 31922 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || |||||||| || ||||| || | | ||| || || | | | Sbjct 31923 CTGAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTAC---GACG 31979 Query 93261 AATTACT--GCTGAT-CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | || | | | |||||| | | ||| |||| | ||| || | | Sbjct 31980 ATACACGTGGGTCACACCATTTGAGTG----------TTTCTTCTGGACACACGGGATGG 32029 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | |||||||| || |||| ||| ||| ||| ||| ||||| || || || | Sbjct 32030 TCTCGATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAA 32089 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| || || | ||| || |||| ||||| || || || ||||| || || || || | Sbjct 32090 GCAGCGAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGC 32149 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 |||||| | |||||||||||| | | || || | ||||| || ||||| |||| Sbjct 32150 GAGCTTCAGGGATCTGCACTTCGTTACTGAAGTTCATGGCCAGATTCTCGTTGACGATAC 32209 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 | || || || || || || | | ||||| || || || ||||| ||| | | Sbjct 32210 CGTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGA 32269 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | || |||| ||| ||||| | ||||| | || ||| ||||||| || || | Sbjct 32270 GTTTCGCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGG 32329 Query 93618 CTTCTGCTTTTTTGTACATATCCCA 93642 | ||||| || |||||||| | ||| Sbjct 32330 CCTCTGCCTTCTTGTACATCTGCCA 32354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556538795242400