Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq35973 132 4e-26 seq46143 96.9 3e-15 >seq35973 Length=2546 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | ||| ||||| || || |||||||| ||| Sbjct 142 ATGCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCG 201 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||||| || || || || || |||||| |||| |||||||||||||| ||| Sbjct 202 CTCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGA 261 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || ||| ||||| || | | || | | ||| | | || Sbjct 262 GGGATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCC 321 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||||| || | ||| |||||||||| ||| || ||||| ||||||||| Sbjct 322 ACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 |||||| || || || |||||||| ||||||| || || || || || || ||||| Sbjct 402 CGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACC 461 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| |||||||| ||||| ||||| |||||||| ||||| ||| ||||| || Sbjct 462 AGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTT 521 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | ||| | | || ||||||| || | ||| |||||||||| ||| Sbjct 522 GACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGT 581 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 582 CTTCACGAAAATCTGCAT 599 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||||||| |||| |||||||||||||| ||||| |||||||| ||||| ||| |||| Sbjct 2 TACCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTT 61 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | || | | || | | ||| | | || ||||||| || | ||| |||||||||| Sbjct 62 GCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCA 121 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 ||| || ||||||||||||||| Sbjct 122 AAGTCTTCACAAAAATCTGCATG 144 >seq46143 Length=82526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || | || | || || || || || |||||||| || Sbjct 41671 ACCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 41612 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || ||| || || || || || ||| |||| |||||||| ||||| || || Sbjct 41611 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 41552 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||| ||||| || || || || | | |||| | |||| | | || || Sbjct 41551 GATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 41492 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| | || | |||||||| || || || || || ||||||||||| Sbjct 41491 GTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419897530851120