Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq45717 284 2e-71 seq46202 266 6e-66 seq46075 257 3e-63 >seq45717 Length=39516 Score = 284 bits (314), Expect = 2e-71 Identities = 889/1365 (65%), Gaps = 40/1365 (3%) Strand=Plus/Minus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||||| |||| || | ||||| || | ||||||||| || | ||| | |||| Sbjct 4901 CAGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGA 4842 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 || ||||||||| ||| |||||||||| || || |||||| || || ||||| Sbjct 4841 CGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCAT 4782 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG--AGCTCG 244258 ||| | |||||||| ||| | | || || | || | || ||| || || Sbjct 4781 GGGGGCAACCAGCAGCGAGTTGCGAAGACCATG--TTTGATTACGTCATCTTTCAGTGCG 4724 Query 244259 TTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGC 244318 ||| | ||| | |||| || | | || ||| |||||||| || ||||| | Sbjct 4723 GCCCAATTCCAAA-GCCC---AGAT--TGAGGTGTGACACCCCACATATCGAACTGGAAG 4670 Query 244319 AGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGC 244378 | |||||||||| | || ||||| | | ||| ||| || || | ||| | | Sbjct 4669 ATCCCCTTGCTGGCTGGCGAGCCCTGGAACGTCTCGTAAGGTCCCAACTCCACGGCAATC 4610 Query 244379 TTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG 244438 | | | || | ||| || ||||||||||||||||||| ||||||||| || Sbjct 4609 TCCATGGACGTCTCCATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTCT 4550 Query 244439 CGGGCCTTGCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | || |||| | | ||| ||| | ||||| |||||| |||| ||||| || || Sbjct 4549 TGAGC-TTGCGGGCTCTCGAACGGGTAGTTCATCAAGATGAAGGCGTCAGCCAGACCTTG 4491 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGG 244554 ||||| ||||| || || | || ||| ||||||| | || || || | ||||| Sbjct 4490 AACGCCAATGCCAATAGGACGATGCCGCATGTTGGA---CTTGCGAGCCTCTGCTACGGG 4434 Query 244555 GTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGC 244614 ||| ||||| |||| || ||||||||||||||||| || |||| ||| || ||| Sbjct 4433 ATAATAGTTGACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTA 4374 Query 244615 CAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTT 244674 || | | ||||| || || | ||||| ||| |||| Sbjct 4373 CAACTTGCGGTAGTCGAACACGGCG---TCCTC---------------CACGAACTTAGG 4332 Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734 ||| |||||| || | |||||| || |||||||| || | || |||| | | Sbjct 4331 GAGCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCAC 4272 Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794 ||| ||| | ||| ||| | ||||| |||| || ||| || || |||||| ||| Sbjct 4271 TTCGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTT 4212 Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854 | ||||||||||| ||||| || || | || ||||||| ||| ||| | | || | Sbjct 4211 GGCTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGC 4152 Query 244855 GTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914 | ||| || | | || |||| ||| | || || || |||| |||||| Sbjct 4151 GAACCACAGCTGCTGCGCGTTGATGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTC 4092 Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACG-CCGGGC 244973 |||||| | ||||||||| ||||||| ||||| ||||| ||| | || || | Sbjct 4091 GTACAGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGG-GCTTCGTTAGGAC 4033 Query 244974 ACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGA 245033 | | ||||||||||| |||| | ||| || | || ||||||||| || || | ||||| Sbjct 4032 AGAAGAGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGA 3973 Query 245034 GGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 | || | ||| | ||| | || | || || ||| |||||| | ||| |||| Sbjct 3972 GCGCGTAGAACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCA 3913 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || ||||| |||||| ||||||| ||||||| ||||| |||| || ||| |||| Sbjct 3912 GGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCT 3853 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 | || ||||||||||| | | | |||| || | ||||| | || | | Sbjct 3852 TCCCTCCGCCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAA 3793 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 |||| || || |||||| ||||| ||||||| | || | | || |||| | Sbjct 3792 TGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCA 3733 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | ||||| || || ||||| |||||| ||| | ||||| Sbjct 3732 TACTGATACCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGT 3673 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG-C 245392 |||||||| || ||| || ||| | || || || || ||||||||||| | Sbjct 3672 AGATGCCCTCGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGAC 3613 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | ||| || ||||| ||||| ||| ||||||| || ||| Sbjct 3612 GTGGCG-TGCCCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAG 3569 >seq46202 Length=175750 Score = 266 bits (294), Expect = 6e-66 Identities = 571/841 (68%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||| |||||||| || |||| |||||| ||||||||| | || |||| | ||| Sbjct 40997 ATGTATAAGAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTCGATCTGGTGCACGAC 40938 Query 42369 ACGGCCGGCTGGGAGTCA-CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | |||| || | || | || ||||| ||| ||||| | | || || Sbjct 40937 CTCAAGGACTGG-AGCAAGCTTACGGACAACGAGCGTCACTTCATCAAACATGTGCTTGC 40879 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||| ||| || || || || || ||||||||||| | | |||| || || Sbjct 40878 CTTCTTCGCTGCCAGCGATGGAATTGTGAACGAGAACCTGGCAATGAATTTCAGTAATGA 40819 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 |||||| ||| || || ||||| |||||||||||||| ||||| |||||| | || Sbjct 40818 AGTGCAGGTGCCTGAAGCTCGTTGCTTTTACGGCTTCCAGATCGCCATCGAGAACATTCA 40759 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||||| ||| | ||||||| ||||||||||| ||| || ||||| | Sbjct 40758 CTCGGAGGTTTACTCT---CTGCTCATTGACACGTACATCAAGGACGCCATCGAGAAGGA 40702 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | ||| | || || ||||| || || || ||| ||||| || |||||||| | Sbjct 40701 CCATCTGCTGCGTGCAATTGAGACCATCCCTTGTGTCACCAAGAAAGCTCACTGGGCGAT 40642 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||| ||| ||| || | | ||| | ||| | || | || ||| | || || Sbjct 40641 CAAGTGGTGCGACCCTCGTGTGTCCTCGTACCCGGAGCGTCTCCTGGCTTTTGCTGCAGT 40582 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGT 42783 || |||||||||||||||||| | ||| |||||| || ||| | ||| || ||| | Sbjct 40581 AGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATTTTTTGGTTGAAGAAGCGTGGTCT 40522 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | ||||| || |||| |||||||||||| |||||||| | |||||||| |||| | || Sbjct 40521 C-ATGCCTGGTCTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGG 40463 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAGCCCTCGAAGGAGCGGGTC 42902 |||| || |||||| ||| ||| | | || | ||| |||| | || || || || Sbjct 40462 ACTTCGCGTGCCTCTTGTACTC---CAAGCT-GGTCACTAAGCTCCCGGAGAGCCGAGTG 40407 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG-CAGTCGCTGCC 42961 | | || | || || ||| ||| || | |||||| | ||| | ||||| || Sbjct 40406 CACGAAATTGTGCGCGATGCTGTGACGATTGAACACGAGTTCGT-ACGTGACTCGCTTCC 40348 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 ||| ||| | ||||||||| | |||||||||| ||||||| ||| ||| || || Sbjct 40347 GGTGGAGCTGATTGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGGCTGA 40288 Query 43022 CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | ||| |||| | | | ||| | | ||||| || | | ||| ||||||| Sbjct 40287 TCGTCTGCTGTACTCGCTCGGTGTGTCCAAGATCTACCACGCTAAGAACCCGTTCGACTG 40228 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 ||||| | || || | |||| ||||| ||||| |||||||| || || | ||| || Sbjct 40227 GATGGACATGATTTCTCTTCAGGGAAAGACGAACTTCTTCGAGAAACGAGTGGGCGAGTA 40168 Query 43142 C 43142 | Sbjct 40167 C 40167 >seq46075 Length=65249 Score = 257 bits (284), Expect = 3e-63 Identities = 563/838 (67%), Gaps = 23/838 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || |||| |||||| ||||||||| | || || | | || Sbjct 32348 ATGTACAAGAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTGGATCTAGTGCACGAT 32289 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 || ||||| | ||| | || || || ||| |||| || | || ||| Sbjct 32288 CTCAACGACTGGGCGAAACTCACAGACAATGAGCGTCACTTCATCAAGCACGTGCTCGCC 32229 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| ||| |||||| || ||||| ||||| ||||||| | |||| || || Sbjct 32228 TTCTTCGCTGCCAGTGACGGTATCGTCAACGAGAATCTGGCCATGAACTTCAGTAACGAA 32169 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||| || |||||||| || ||||||||||| || || |||||| | ||| Sbjct 32168 GTGCAGATCCCTGAAGCTCGCTGCTTTTATGGCTTCCAGATCGCTATCGAGAACATCCAC 32109 Query 42549 TCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || || || ||| | ||||| | ||||||||||| |||| | || ||| || Sbjct 32108 TCGGAAGTCTACTCG---CTGCTTATTGACACGTACATCAAGGATGCGGTGGAGAAAGAC 32052 Query 42606 GGGCTG-TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 || ||| || | || ||||| || || || || ||||||| | || Sbjct 32051 CACCTCCTTCGAG-CTATCGAGACCATCCCGTGTGTCCAGAAGAAA----------CACT 32003 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||| ||| || | | | ||| || ||| | ||| |||| ||| | || || Sbjct 32002 CAAATGGTGTGACCCACGTGTATCGTCGTACGCAGAGCGTCTGCTAGCGTTTGCTGCAGT 31943 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGT 42783 || || ||||||||||| ||| | ||| |||| | |||||||||||| || ||| | Sbjct 31942 GGAAGGAATCTTCTTCTCAGGCTCGTTCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACT 31883 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || || | ||||||||||||| | || || | |||||||| |||| | || Sbjct 31882 T-ATGCCTGGCCTAAGCTTCTCGAACGAAATGATTAGTCGCGACGAGGGTATGCACACGG 31824 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 |||| || ||||| ||| ||||| | ||| |||||| || || || |||| Sbjct 31823 ACTTCGCGTGCCTGATGTACTCGAAGCTGGTCA---ACAAGCTGCCGGAGAGTCGTGTCC 31767 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||| || || |||| ||| ||| | |||||| | | || || || | Sbjct 31766 ATGAGATCATTCGTGACGCTGTGGCGATTGAGCACGAGTTCGTGTGCGATTCTCTCCCGG 31707 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 || || ||||||||||| | |||||||| ||||||| ||| || || || | Sbjct 31706 TGGAGCTCATCGGCATGAACTCGGCGCTCATGTGTCAGTACATTGAGTTTGTGGCAGATC 31647 Query 43024 ATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTA 43083 ||| |||| | ||||| | | |||||||| | | ||| ||||||| | Sbjct 31646 GTCTTCTGTACTCACTGGGTGTATCCAAGATCTACAACGTGAAGAACCCATTCGACTGGA 31587 Query 43084 TGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||| | ||||| | |||||||||| ||||| |||||||||||||| | ||| || Sbjct 31586 TGGACATGATCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGCGCGTGGGCGAGTA 31529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943793135857600