Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq44488 87.8 1e-12 seq35973 87.8 1e-12 seq3294 86.0 5e-12 >seq44488 Length=18910 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| ||||| || ||||||||| |||||||| || || Sbjct 18898 ACCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC-GC 18840 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| || | |||||||||||||| || ||||||||||| || || Sbjct 18839 TCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCG 18780 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | || ||| |||||| ||| || Sbjct 18779 GGATGCCCTCCTTGTCCTGAATCTT 18755 >seq35973 Length=2546 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| |||||||| ||||||||| |||||||| || || Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 431 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||| || || || ||||| |||||||| || || Sbjct 432 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 491 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||||||||| Sbjct 492 GATGCCTTCCTTGTCCTGAATTTTTTGCTT 521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||||||||||||| |||||||| |||||||| || || Sbjct 145 CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTC-GCT 203 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| |||||||| || || ||||| ||||| || || || Sbjct 204 CAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGG 263 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || || ||| |||||||||||| Sbjct 264 GATGCCTTCCTTATCCTGAATTTTTTGCTT 293 >seq3294 Length=374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || ||||||||| |||||||| || || Sbjct 143 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC-GCT 85 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||||||||| || ||||||||||| || ||| Sbjct 84 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 25 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 24 GATGCCCTCCTTGTCCTGAATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396838538700520