Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq35973 149 1e-30 seq44488 116 9e-21 seq43815 114 3e-20 seq46143 113 1e-19 seq39238 105 2e-17 >seq35973 Length=2546 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || ||||||| ||| ||| || ||||| || |||| Sbjct 141 CATG-CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGT 199 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || |||||||||||||||||||| | Sbjct 200 CGCTCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAG 259 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| |||||||| ||||| || ||||| || || || || | | Sbjct 260 GAGGGATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCT 319 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| ||||||| |||||| || || |||||||| Sbjct 320 CCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| ||| || || ||||| || |||| Sbjct 369 CATG-CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGT 427 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 428 CGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAG 487 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || ||||| ||||| || ||||| || || || || | | Sbjct 488 GAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCT 547 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 548 CCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||||||||||||| | ||||| ||||| || ||||| ||||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || || || | || || || |||||||||||||| ||||||| | Sbjct 64 TTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAA 123 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| Sbjct 124 GTCTTCACAAAAATCTGCAT 143 >seq44488 Length=18910 Score = 116 bits (128), Expect = 9e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || || || ||||| || |||||| Sbjct 18897 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 18838 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| || ||||| || | ||| Sbjct 18837 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 18778 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | ||||| || || || || || || ||||| Sbjct 18777 ATGCCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACA 18718 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 ||||||||||| ||||| || ||||| ||||| ||||| ||||||||| ||| Sbjct 18717 TCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTTGT 18666 >seq43815 Length=14243 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | |||||||| || || ||||| |||||| || || || || Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCA 5126 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || |||| ||||| || || Sbjct 5125 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 5066 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 5065 ATCTGCATGAT 5055 >seq46143 Length=82526 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || || || | || || || |||||| Sbjct 41634 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 41575 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| ||||| || |||||||||||| || || || Sbjct 41574 ATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG 41515 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || ||||||||||| || || || || || ||||||||| Sbjct 41514 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACG 41455 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 41454 AAAATCTGCATT 41443 >seq39238 Length=3815 Score = 105 bits (116), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| ||| || || ||||| || |||||| Sbjct 3562 CCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3621 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||||||||| || | ||| Sbjct 3622 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 3681 Query 288367 ATTCCTTCTTTATCCTGGA--TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||||| || ||||| | |||| || || ||||| || || || || | || | Sbjct 3682 ATGCCTTCCTTGTCCTGTAATTTTTTGC-TTGACGTTGTCGATCGAGTCTGAAGGCTCCA 3740 Query 288425 CTTCGAGCGTGATCGTCTT-CCCGGTCAGAGTCTTGAC-GAATATCTGCAT 288473 | || |||||||||||||| || | | | |||||| || || |||||||| Sbjct 3741 CGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178955211464280