Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq44604 152 1e-31 seq46075 118 2e-21 seq46202 109 1e-18 >seq44604 Length=19890 Score = 152 bits (168), Expect = 1e-31 Identities = 676/1057 (64%), Gaps = 55/1057 (5%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 18446 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGG 18387 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || ||| |||||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 18386 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGACGGGTGC 18327 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || ||| |||| | |||| || ||||| |||| |||||| | || Sbjct 18326 TTCCACACCTGACCGCTGGTCGGCTCCACTTCACCCGTTAGCATCTTAATCAACGTCGAC 18267 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCTG 333547 || || ||||| || || | ||| | || | | ||| || || || | Sbjct 18266 TTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGAAAGAGCGCA-CGTCAC--G 18210 Query 333548 GGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 333607 | || ||||| | | || |||||||| |||| | || ||| | Sbjct 18209 GAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTACGA-ACAGTTGG 18155 Query 333608 T-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGA 333666 | || || |||| |||| |||| | | ||||| || |||||||||| Sbjct 18154 TCAGACGGATAATGGGTTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGA 18095 Query 333667 ACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCT 333723 | | || | | ||| || |||| || ||||||| | | || || || Sbjct 18094 AGATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCT 18038 Query 333724 TCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAAT 333783 || |||||||| ||| || || |||||||| |||||||||| || | ||||| | Sbjct 18037 GCTCCACGAACTTGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGT 17981 Query 333784 GGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG 333843 | || || ||| || || | ||| ||||| || |||||||| ||||| || | | | | Sbjct 17980 GAATGATGTTGGTACAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATGGAGG 17921 Query 333844 AAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAG 333901 |||| | | ||| | ||||||| ||| || |||||| |||||| || | Sbjct 17920 TCACGTTCGTCAGGCTCGTCAGGTAGTTC--TCGAGCCACGCCACGTTCTTGACGTCCAA 17863 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| || ||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 17862 GTGGTTCGTAGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCAG 17803 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAA----TTGGG---GCAGATTGGC 334014 | |||||||| ||||| || || ||||| || | |||| ||| | ||| Sbjct 17802 CTCCAGTTTCATCTTCCAACCACCCGAAAGGGTACCCACACCCTGGGCCTGCATCTCGGC 17743 Query 334015 GCTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGT 334074 | | ||||| || | | ||||| ||| || | ||| | | ||| Sbjct 17742 GGT-------GAAGCCGACACCTGCAAGAGTGTCCTCGACCTCCTTACGGG---GAGTGT 17693 Query 334075 TTTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 | ||| | | || |||| | || |||||||| | | | || | || || | Sbjct 17692 T---CTTCA---GGTCCTCATCGACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCG 17639 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 334191 | | | || | ||| || || | |||| || | | || |||||| || | Sbjct 17638 AAGCCTGCAGGTTGTGCTCGACAAACACAGTCTTAAGCTCGTCACGGCTGGGGAAGCCCT 17579 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||| ||||| || |||||||||| ||| || ||||| ||||| || || | Sbjct 17578 CGAGCTGGCCGTTGGAGATGGCGCGCATCAAAGTCGACTTACCACAACCGTTGGGTCCGC 17519 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 ||||||||||||||| ||||||||| ||| | || | |||||||| ||||| | | Sbjct 17518 ACAGACCGTAGCGGTGTCCACGCTTGAGACGAAGACGGGCGTTGTTCAGCAGAATCATAC 17459 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 |||| || || || || || || || | ||||| || Sbjct 17458 CACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 17422 >seq46075 Length=65249 Score = 118 bits (130), Expect = 2e-21 Identities = 558/862 (65%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | ||| ||||| | ||||| |||||||||| ||| |||| ||| Sbjct 32378 TTCCCCATCCAGGAGCACGATGTGTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTCTGG 32319 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | ||| | ||| || || ||||||| | |||||||| || Sbjct 32318 ACTGCCGAGGAGCTGGATCT-AGTGCACGATCTCAACGACTGG---GCGAAACTCACAGA 32263 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | | || ||||| |||||||| ||| | || | || ||||| | | || ||||| || Sbjct 32262 CAATGAGCGTCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGACGGTATCGT 32203 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | || |||||| | ||||| ||| ||||| | | || || || || || Sbjct 32202 CAACGAGAATCTGGCCATGAACTTCAGTAACGAAGTGCAGATCCCTGAAGCTCGCTGCTT 32143 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 ||||| | ||| | | ||| ||||| || ||| || | || ||||| || Sbjct 32142 TTATGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAGTCTACTCGCTGCTTATTGA 32083 Query 243174 CGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCT-TTTCGACGCCATCGAAAACAT 243230 | || || ||| |||| ||| | || | || ||||| || ||||| | ||| Sbjct 32082 CACG--TACATCAAGGATGCGGTGGAGAAAGACCACCTCCTTCGA-GCTATCGAGACCAT 32026 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC-CG-GTA-AATC 243287 ||| || || || || || ||| || ||| || || || ||| || Sbjct 32025 CCCGTGTGTCCAGAAGAA-ACA-------CTC--AAATGGTGTGACCCACGTGTATCGTC 31976 Query 243288 ATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || |||||||| | || | | ||| || ||||| || | || || || | Sbjct 31975 GTACGCAGAGCGTCTGCTAGCGTTTG-CTGCAGTGGAAGGAATCTTCTTCTCAGGCTCGT 31917 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| || | || ||||| ||| ||| | ||||||||||| | | || |||| Sbjct 31916 TCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACTTATGCCTGGCCTAAGCTTCTCGAACG 31857 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAG 243465 | | || |||||||||||||| | ||| | |||| ||| || ||||| || ||| Sbjct 31856 AAATGATTAGTCGCGACGAGGGTATGCACACGGACTTCGCGTG-CCTGATGTACTCGAAG 31798 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||||| || || || ||| | | ||||| || || || | | Sbjct 31797 CTGGTCAACAAGCTGCC-GGAGAGTCGTGTCCATGAGATCATTCGTGACGCTGTGGCGAT 31739 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || | || ||| | ||||| || | || ||| || ||||||||||| | || Sbjct 31738 TGAGCACGAGTTCGTGTGCGATTCTCTCCCGGTGGAGCTCATCGGCATGAACTCGGCGCT 31679 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT-TATGAGA 243643 |||| | |||||||| || || || || || || || | | | || ||| ||| | Sbjct 31678 CATGTGTCAGTACATTGAGTTTGTGGCAGATCGTCTTCTGTACTCACTGGGTGTAT-CCA 31620 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | | |||||| |||||||| || | || ||||| | || || || || || || | Sbjct 31619 AGATCTACAACGTGAAGAACCCATTCGACTGGATGGACATGATCTCACTACAGGGCAAGA 31560 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| ||||| || Sbjct 31559 CAAACTTCTTCGAGAAGCGCGT 31538 >seq46202 Length=175750 Score = 109 bits (120), Expect = 1e-18 Identities = 553/862 (64%), Gaps = 22/862 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||| ||| | | || ||||| | |||||||||||||||| ||| |||| ||| Sbjct 41027 TTCCCCATTCAGGAGCACGAAGTGTGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGG 40968 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | |||| ||| ||| || |||||| || || || | || Sbjct 40967 ACTGCCGAGGAGCTCGATCTG-GTGCACGACCTCAAGGACTGGAGC---AAGCTTACGGA 40912 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | |||| ||||| ||||||||||| | || | || ||||| | | |||||| ||||| Sbjct 40911 CAACGAGCGTCACTTCATCAAACATGTGCTTGCCTTCTTCGCTGCCAGCGATGGAATTGT 40852 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || ||| | || || ||| ||||| ||| || || || || || Sbjct 40851 GAACGAGAACCTGGCAATGAATTTCAGTAATGAAGTGCAGGTGCCTGAAGCTCGTTGCTT 40792 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 ||| | | ||| | || ||| || || || || || |||| || || || Sbjct 40791 TTACGGCTTCCAGATCGCCATCGAGAACATTCACTCGGAGGTTTACTCTCTGCTCATTGA 40732 Query 243174 CGCGCTTATTTCAGATGA-ACAAGAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | || || ||| | || | | | ||| || | || | || || || | ||| Sbjct 40731 CACG--TACATCA-AGGACGCCATCGAGAAGGACCATCTGCTGCGTGCAATTGAGACCAT 40675 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGT---AAATC 243287 || || || || || | ||||| |||||| || || || || Sbjct 40674 CCCTTGTGTCACCAAGAAAGCTCACTGGGCGATCAAGTGGTGCGACCCTCGTGTGTCCTC 40615 Query 243288 ATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | | ||||||||| | || | | ||| || ||||| || | || || || || Sbjct 40614 GTACCCGGAGCGTCTCCTGGCTTTTG-CTGCAGTAGAAGGCATCTTCTTCTCGGGCTCTT 40556 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| |||| |||||| || ||| ||| | |||||||| ||| | | || |||| Sbjct 40555 TCTGCTCCATTTTTTGGTTGAAGAAGCGTGGTCTCATGCCTGGTCTCAGCTTCTCGAACG 40496 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAG 243465 || |||||||||| ||||||||| | ||| | |||| ||| || |||| || ||| Sbjct 40495 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCGTG-CCTCTTGTACTCCAAG 40437 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || | ||||| || || || || | |||| | || || || | Sbjct 40436 CTGGTCACTAAGCT-CCCGGAGAGCCGAGTGCACGAAATTGTGCGCGATGCTGTGACGAT 40378 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | || ||| | | ||| | |||| ||| |||||||||||||| | || Sbjct 40377 TGAACACGAGTTCGTACGTGACTCGCTTCCGGTGGAGCTGATTGGCATGAACTCGGGCCT 40318 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || || || | | | |||| || | || | Sbjct 40317 CATGTGCCAGTACATTGAGTTCGTGGCTGATCGTCTGCTGTACTCGCTCGG-TGTGTCCA 40259 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | ||| || | |||||||| || | || ||||| | ||||| ||||| || || | Sbjct 40258 AGATCTACCACGCTAAGAACCCGTTCGACTGGATGGACATGATTTCTCTTCAGGGAAAGA 40199 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| || || || Sbjct 40198 CGAACTTCTTCGAGAAACGAGT 40177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102226316131000