Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq45717 253 2e-62 seq46202 147 3e-30 seq46075 120 4e-22 >seq45717 Length=39516 Score = 253 bits (280), Expect = 2e-62 Identities = 1064/1654 (64%), Gaps = 62/1654 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| ||||||||| || | ||||| || | | ||| Sbjct 5192 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAAAAGTGCATGGACGTGAGCTT 5133 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 113715 || || || | ||| || ||||| ||| ||| | ||| || | Sbjct 5132 ACTGATAGTCGGGTCAGCGATGTGGATGTTCAGCGACTGACTCTGGCA--GAT--AT-AC 5078 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| || || ||||| | || || | ||| ||||| ||||| |||||||| ||| | Sbjct 5077 GCG-CCTCGGTCCGCTGACAAGTCCAGAACAGCCTTCTGTTTGATCTCCCACACCGTTTT 5019 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| | ||||| || || || || | ||| ||||||| |||||||| | || Sbjct 5018 GTACTTCTCCTTAACGTCTTCCGGAATGGTCTTGATCTTTTGGACTGAGCCACCATCATT 4959 Query 113836 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | || ||| | | || ||| | ||||| || | || | || |||| || Sbjct 4958 CAGAATCTGAT--TGCGTACTTCCGGCGTCCAGATTCCGAGCTCGATTAGTTCCTTCATC 4901 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || ||||| ||||| | ||||| || || || ||| | || || |||| | Sbjct 4900 AGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGAC 4841 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| | |||| ||||| |||| ||||||||| |||||||||||||||||| Sbjct 4840 GTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATG 4781 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | || || ||| || ||||| | || | | | || || || ||| || Sbjct 4780 GGGGCAACCAGCAGCGAGTTGCGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCC 4721 Query 114074 CAGT-------CGTAG-TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125 || | | || ||||| | || | |||| ||||||| ||||||| ||| | Sbjct 4720 CAATTCCAAAGCCCAGATTGAGGTGTGACACCCC-----ACATATCGAACTGGAAGATCC 4666 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC-CGCCAAT-TC 114183 | | | ||||||||| |||| || |||||||| || ||| ||| | || |||| || Sbjct 4665 CCTTGCTGGCTGGCGAGCCCTGGAACGTCTCGTAAGGTCCC--AACTCCACGGCAATCTC 4608 Query 114184 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 114243 | || ||| | ||| || || || ||||| || ||| |||| | | || Sbjct 4607 CATGGACGTCTCCATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTC-TT 4549 Query 114244 GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCA-CAAAATAAATACATCCGCGAGACCTTG 114300 | || | || || |||| | ||| || ||| || || | || || |||||||| Sbjct 4548 GAGCTTGCGGGCTCTCGAACGGGTAGTT--CATCAAGATGAAGGCGTCAGCCAGACCTTG 4491 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGAT 114359 || || | |||||| || ||||| | ||| || ||||| ||||| ||| | ||||||| Sbjct 4490 AACGCCAATGCCAATAGGACGATGCCGCATGTTGGACTTGCGAGCC-TCTGCTACGGGAT 4432 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 || | || || || ||| | || || || || | ||||| | ||| | | Sbjct 4431 AATAGTTGACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTACA 4372 Query 114420 GCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 ||| ||| || || || ||| || | || ||||||| || |||| ||| Sbjct 4371 ACTTGCGGTAGTCGAACACGGCG-------TCCTCCACGAACTTAGGGAGCGCGACGGAC 4319 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 || | || ||||| | |||||| || ||||| || | ||| || || Sbjct 4318 GCTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCACTTCGCAGCATAAG 4259 Query 114539 TT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || | |||||| |||||||||| ||| || ||||| ||| || |||| Sbjct 4258 TTGCTGGAGCG--AATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCT 4201 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 114656 |||| ||||| | || || ||||| | || | | | || || ||| || Sbjct 4200 TGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCA--CAG 4143 Query 114657 CGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 114713 | || || | | ||| || || || || || |||||||||| ||| || | Sbjct 4142 CTGCTGCGCGTTGA-TGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTACAGAG 4084 Query 114714 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 114773 ||| ||||| || ||| | ||| |||| || || || | | || ||||||||| Sbjct 4083 TTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGAC 4024 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | || |||| || |||||||||||||| || || | |||||| || ||| Sbjct 4023 TCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGA 3964 Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 | | || || ||| ||| | || || || ||||| |||| || || | Sbjct 3963 ACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAA 3904 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAG 114950 | || |||||||| || |||| ||| | |||| || ||||| || | || Sbjct 3903 ACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGC 3844 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 |||||| ||||| | ||||||| | ||||| || || ||||| || || || |||| | Sbjct 3843 CCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGG 3784 Query 115011 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATAC 115070 | ||| || || || || || ||| |||| | || | || || |||| Sbjct 3783 ACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATAC 3724 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGT 115130 | || || || ||||| || ||||| ||||| | | | ||| || ||||||| || | Sbjct 3723 CGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATGCCCT 3664 Query 115131 CGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 115190 ||||||||||| ||| | || | ||||| || |||| || || | ||| || | Sbjct 3663 CGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGC 3604 Query 115191 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 | || |||||||| || || || ||||| |||| Sbjct 3603 CCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAA 3570 >seq46202 Length=175750 Score = 147 bits (162), Expect = 3e-30 Identities = 398/596 (67%), Gaps = 25/596 (4%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || || |||||||||||||| ||||| || | ||| | Sbjct 40156 CCAGCCTTGGAGTACTCGCCCACTCGTTTCTCGAAGAAGTTCGTCTTTCCCTG-AAGA-G 40213 Query 125807 ATAT--TCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCT 125864 | || | ||||| | || || |||||||| | || | || | | ||| || | | Sbjct 40214 AAATCATGTCCATCCAGTCGAACGGGTTCTTAGCGTGGTAGATCTTGGACACACCGAGCG 40273 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 | || |||||||| | ||| |||||||||||| |||| | |||||||| | Sbjct 40274 AGTACAGCAGACGATCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGC 40333 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 | || || | || |||| ||| | |||| | | ||||| ||| || || | Sbjct 40334 CAATCAGCTCCACCGGAAGCGAGTCACGTACGAACTCGTGTTCAATCGTCACAGCATCGC 40393 Query 125985 GCACGATGGCGTGAA-TGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAG----AG 126039 |||| || |||| | | | || | || | || || || |||| || || Sbjct 40394 GCACAATTTCGTGCACTCGGCTCTCCGGGAGCT-TAGTGACCAG---CTTGGAGTACAAG 40449 Query 126040 TTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 126099 |||| | || || ||| | ||||||||||| |||||| || |||||||||| Sbjct 40450 AGGCACG-CGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCT 40508 Query 126100 CAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAA 126159 || || ||||||||||| |||||||||||||| ||||| | || || || |||||||| Sbjct 40509 GAGACCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAA 40568 Query 126160 GAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG----CGCGACT 126215 |||||| || || || || || || | ||||||||| | | ||| | ||| Sbjct 40569 GAAGATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGA-- 40626 Query 126216 TTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 126275 | ||| ||||||| |||||||| || || || || || ||| |||| ||||| | Sbjct 40627 --GGGTCGCACCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAA 40684 Query 126276 TCGCTTCAAAGAGTTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 126330 | || | || | | ||| || ||||| || ||||||||| | || ||||| Sbjct 40685 TTGCACGCAGCAGATGGTCCTTCTC-GATGGCGTCCTTGATGTACGTGTCAATGAG 40739 >seq46075 Length=65249 Score = 120 bits (132), Expect = 4e-22 Identities = 379/578 (66%), Gaps = 22/578 (4%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || ||||||||||||||||||||||| || | | ||| | ||||| Sbjct 31529 TACTCGCCCACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGTAGTGAGATCATGTCCATC 31588 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGACG 125877 | || ||||||||||| ||| | || | | || |||| | || || ||||| Sbjct 31589 CAGTCGAATGGGTTCTTCACGTTGTAGATCTTGGATACACCCAGTGAGTAC-AGAAGACG 31647 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||| | || |||||||||||| | |||| | | |||||||| |||||||| | Sbjct 31648 ATCTGCCACAAACTCAATGTACTGACACATGAGCGCCGAGTTCATGCCGATGAGCTCCAC 31707 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 ||||| | || | | |||| | | |||||| |||| || || || | ||| | || Sbjct 31708 CGGGAGAGAATCGCACACGAACTCGTGCTCAATCGCCACAGCGTCACGAATGATCTCATG 31767 Query 125998 AATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAACT 126053 | | || | ||| | | ||| || || | | | || |||| | || | Sbjct 31768 GACACGACTCTCCGGCAGCT-TGTTGACCAGCTTCGAGTACA--TCAGGCACG-CGAAGT 31823 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| | ||||||||| || || | ||| |||||||||| || || ||||| | Sbjct 31824 CCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGAAGCTTAGGCCAGGCATAA 31883 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || |||||||| | |||||| | | || || || || |||||||||||||| |||| Sbjct 31884 GTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTGAGAAGAAGATTCCTTCCA 31943 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCAAACCACTTC 126232 | || ||||| | |||||||| || | || || || || |||| |||| || Sbjct 31944 CTGCAGCAAACGCTAGCAGACGCTCTGCGTACGA-CGATACACGTGGGTCACACCATTTG 32002 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 126292 | | || |||| || |||||||| ||||| ||| ||| || ||| | Sbjct 32003 AGTG----------TTTCTTCTGGACACACGGGATGGTCTCGATAGCTCGAAGGAGGTGG 32052 Query 126293 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | || || | ||| ||||||||| | || || || Sbjct 32053 TCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAG 32090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597008180280800